CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021214.1-P	Field mustard	cytosol	100.0	100.0
CDY34988	Canola	cytosol	99.39	99.39
CDX92110	Canola	cytosol	94.48	94.48
CDX75899	Canola	cytosol	94.48	94.48
CDX82383	Canola	cytosol	94.48	94.48
CDY67360	Canola	cytosol	36.81	89.55
CDY69106	Canola	cytosol	41.72	89.47
CDY44517	Canola	cytosol	36.2	88.06
AT3G17020.1	Thale cress	cytosol	87.73	87.73
CDX95890	Canola	cytosol	92.64	77.44
VIT_05s0077g01070.t01	Wine grape	cytosol	71.17	70.3
Solyc01g059930.2.1	Tomato	cytosol, extracellular	66.26	66.26
PGSC0003DMT400056226	Potato	cytosol, extracellular	66.26	66.26
GSMUA_Achr11P...	Banana	cytosol	63.8	64.2
KRH11952	Soybean	cytosol	63.8	63.41
TraesCS1D01G108300.1	Wheat	peroxisome	58.28	57.23
TraesCS1A01G106600.1	Wheat	peroxisome	57.67	56.63
Os05t0157200-01	Rice	cytosol, nucleus, plasma membrane, plastid	57.67	56.29
Zm00001d037573_P001	Maize	cytosol	53.99	52.69
EES19072	Sorghum	cytosol	53.99	52.69
KRH36979	Soybean	endoplasmic reticulum, extracellular, vacuole	44.17	49.66
GSMUA_Achr8P06380_001	Banana	cytosol	19.02	47.69
CDY50688	Canola	cytosol	44.79	45.91
CDY43136	Canola	cytosol	44.17	45.28
CDX73512	Canola	cytosol	42.33	43.95
HORVU1Hr1G023260.1	Barley	plastid	57.67	42.73
TraesCS1B01G124100.1	Wheat	cytosol	51.53	42.64
CDX67580	Canola	cytosol	41.1	42.14
CDY13163	Canola	cytosol	41.72	41.98
CDX76180	Canola	cytosol	41.72	41.98
CDY07565	Canola	cytosol	40.49	41.51
CDY54033	Canola	cytosol	20.86	35.05
Zm00001d011125_P001	Maize	extracellular	52.76	34.96
CDY54032	Canola	plastid	6.75	32.35

Protein Annotations

Gene3D:3.40.50.620	MapMan:35.2	GO:A0A078ITH6	UniProt:A0A078ITH6	EnsemblPlants:CDY52729	ProteinID:CDY52729
ProteinID:CDY52729.1	GO:GO:0006950	GO:GO:0008150	EnsemblPlantsGene:GSBRNA2T00007669001	InterPro:IPR014729	PFAM:PF00582
PRINTS:PR01438	PANTHER:PTHR31964	PANTHER:PTHR31964:SF65	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	UniParc:UPI00025439D2
InterPro:Universal_stress_UspA	InterPro:UspA	SEG:seg	:	:	:

Description

BnaC01g44140DBnaC01g44140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITH6]

Coordinates

chrLK033122:-:62330..63690

Molecular Weight (calculated)

17874.6 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.032

Length

163 amino acids

Sequence
(BLAST)

001: MAESNGRRIG VAVDFSECSK KALNWAIENV VRDGDYLILI TVAHDMHYED GEMQLWETVG SPLIPLSEFS EAAVMKKYGV KPDAETLDIA NTAARQKSIT
101: VVMKIYWGDP REKICEAAEH IPLSSLVIGN RGLGGLKRMI MGSVSNHVVN NVACPVTVVK AHH

Best Arabidopsis Sequence Match ( AT3G17020.1 )
(BLAST)

001: MAESGGRRIG VAVDFSDCSK KALSWAIDNV VRDGDHLILI TIAHDMNYEE GEMQLWETVG SPFIPMSEFS DAAVMKKYAL KPDAETLDIV NTAARKKTIT
101: VVMKIYWGDP REKICAAAEQ IPLSSLVMGN RGLGGLKRMI MGSVSNHVVN NVACPVTVVK AHI

Arabidopsis Description

AT3g17020/K14A17_14 [Source:UniProtKB/TrEMBL;Acc:Q9LSP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.