Factsheet for Solyc01g059930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056226	Potato	cytosol, extracellular	98.77	98.77
VIT_05s0077g01070.t01	Wine grape	cytosol	73.01	72.12
Bra022190.1-P	Field mustard	cytosol	68.1	68.1
CDX92110	Canola	cytosol	68.1	68.1
CDX75899	Canola	cytosol	66.87	66.87
Bra001649.1-P	Field mustard	cytosol	66.26	66.26
CDY52729	Canola	cytosol	66.26	66.26
CDY34988	Canola	cytosol	66.26	66.26
CDX82383	Canola	cytosol	66.26	66.26
Bra021214.1-P	Field mustard	cytosol	66.26	66.26
AT3G17020.1	Thale cress	cytosol	63.8	63.8
KRH11952	Soybean	cytosol	63.8	63.41
Bra038472.1-P	Field mustard	cytosol	29.45	63.16
CDY69106	Canola	cytosol	28.22	60.53
GSMUA_Achr11P...	Banana	cytosol	59.51	59.88
CDY67360	Canola	cytosol	24.54	59.7
CDY44517	Canola	cytosol	23.93	58.21
Os05t0157200-01	Rice	cytosol, nucleus, plasma membrane, plastid	57.67	56.29
CDX95890	Canola	cytosol	66.87	55.9
EES19072	Sorghum	cytosol	57.06	55.69
Zm00001d037573_P001	Maize	cytosol	56.44	55.09
TraesCS1A01G106600.1	Wheat	peroxisome	55.83	54.82
TraesCS1D01G108300.1	Wheat	peroxisome	55.83	54.82
KRH36979	Soybean	endoplasmic reticulum, extracellular, vacuole	44.79	50.34
GSMUA_Achr8P06380_001	Banana	cytosol	19.63	49.23
Solyc04g014600.2.1	Tomato	nucleus	46.63	46.91
Solyc09g011660.2.1	Tomato	cytosol	42.94	42.68
Solyc09g011670.2.1	Tomato	cytosol, nucleus	41.72	41.46
HORVU1Hr1G023260.1	Barley	plastid	55.83	41.36
TraesCS1B01G124100.1	Wheat	cytosol	49.69	41.12
Solyc10g086670.1.1	Tomato	cytosol	39.88	39.16
Zm00001d011125_P001	Maize	extracellular	57.06	37.8

Protein Annotations

EnsemblPlants:Solyc01g059930.2.1	EnsemblPlantsGene:Solyc01g059930.2	Gene3D:3.40.50.620	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006950	GO:GO:0008150	GO:GO:0009409	GO:GO:0009628	GO:GO:0016020	InterPro:IPR014729
InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF65	PFAM:PF00582
PRINTS:PR01438	SUPFAM:SSF52402	UniParc:UPI000276231F	UniProt:K4AWA0	MapMan:35.2	:

Description

No Description!

Coordinates

chr1:+:69260625..69263278

Molecular Weight (calculated)

17904.9 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.026

Length

163 amino acids

Sequence
(BLAST)

001: MEGGGRFVGV AVDFSACSNK ALKWAIDNIL RKGDHLILVT VRPEGHYEEG EMQLWEATGS PLIPLSEICD GHTMKRYGVN PDPETLQMIT LAARQMEITV
101: VMKIFWGDAR EKLCEAIDKT PLSCLVIGNR GLGKIKRVIM GSVSNYVVNN ATCPVTVVKN AED

Best Arabidopsis Sequence Match ( AT3G17020.1 )
(BLAST)

001: MAESGGRRIG VAVDFSDCSK KALSWAIDNV VRDGDHLILI TIAHDMNYEE GEMQLWETVG SPFIPMSEFS DAAVMKKYAL KPDAETLDIV NTAARKKTIT
101: VVMKIYWGDP REKICAAAEQ IPLSSLVMGN RGLGGLKRMI MGSVSNHVVN NVACPVTVVK AHI

Arabidopsis Description

AT3g17020/K14A17_14 [Source:UniProtKB/TrEMBL;Acc:Q9LSP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.