Factsheet for Solyc09g011660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g011660.2.1
Solyc09g011670.2.1
Solyc10g086670.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	Solyc09g011660.2.1	AT3G53990.1	21798944
AT3G53990.1	Solyc09g011670.2.1	AT3G53990.1	21798944
AT3G53990.1	Solyc10g086670.1.1	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011670.2.1	Tomato	cytosol, nucleus	87.8	87.8
VIT_08s0007g01430.t01	Wine grape	cytosol	74.39	74.39
KRH75751	Soybean	endoplasmic reticulum	74.39	74.39
KRH62427	Soybean	endoplasmic reticulum	73.78	72.46
KRH00077	Soybean	cytosol	66.46	69.43
Bra007038.1-P	Field mustard	cytosol	66.46	68.99
AT3G53990.1	Thale cress	cytosol	67.07	68.75
Solyc10g086670.1.1	Tomato	cytosol	68.9	68.07
KRH49226	Soybean	cytosol	64.63	67.52
Bra014852.1-P	Field mustard	cytosol	64.63	65.43
Bra003163.1-P	Field mustard	cytosol	63.41	65.41
GSMUA_AchrUn_...	Banana	cytosol	52.44	65.15
GSMUA_Achr6P23610_001	Banana	cytosol	59.76	61.25
EES18332	Sorghum	cytosol	60.37	59.64
EES03887	Sorghum	cytosol	56.71	58.86
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	57.32	56.63
TraesCS1B01G289700.1	Wheat	cytosol	57.32	56.63
Os01t0849600-01	Rice	cytosol, plastid	55.49	56.17
GSMUA_Achr9P03740_001	Banana	cytosol	56.1	55.76
TraesCS1A01G280700.1	Wheat	cytosol	56.1	55.42
GSMUA_Achr3P17670_001	Banana	mitochondrion	62.2	55.14
Solyc04g014600.2.1	Tomato	nucleus	50.61	51.23
CDY54033	Canola	cytosol	28.05	47.42
Zm00001d012382_P002	Maize	cytosol	54.88	47.12
Solyc01g059930.2.1	Tomato	cytosol, extracellular	42.68	42.94
Os05t0453700-01	Rice	cytosol	48.78	42.33
HORVU3Hr1G085660.9	Barley	cytosol	48.17	40.93
Zm00001d038351_P004	Maize	cytosol	51.22	35.15

Protein Annotations

EnsemblPlants:Solyc09g011660.2.1	EnsemblPlantsGene:Solyc09g011660.2	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150	InterPro:IPR014729
InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23	PFAM:PF00582
PRINTS:PR01438	SEG:seg	SUPFAM:SSF52402	UniParc:UPI000276B344	UniProt:K4CRJ2	MapMan:35.2

Description

No Description!

Coordinates

chr9:-:4909289..4910765

Molecular Weight (calculated)

18517.4 Da

IEP (calculated)

7.624

GRAVY (calculated)

-0.150

Length

164 amino acids

Sequence
(BLAST)

001: MVKDRTIGVA VDFSKSSKTA LKWAIDNLAD KGDTFYIIHI KTHSSDESRN KLWAQSGSPL IPLVEFREAE VLKKYDVETD IELLDLLDTA TRQKEIKIVI
101: KLYWGDAREK LCEAVEHLKL NSLVMGSRGL STLQRIFLGS VTNYVLSVAT CPVTVVKDPD FHKH

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.