Factsheet for Bra014852.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003163.1-P
Bra007038.1-P
Bra014852.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	Bra003163.1-P	AT3G53990.1	21798944
AT3G53990.1	Bra007038.1-P	AT3G53990.1	21798944
AT3G53990.1	Bra014852.1-P	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76180	Canola	cytosol	100.0	100.0
CDY13163	Canola	cytosol	99.38	99.38
Bra003163.1-P	Field mustard	cytosol	87.04	88.68
AT3G53990.1	Thale cress	cytosol	87.04	88.12
Bra007038.1-P	Field mustard	cytosol	85.8	87.97
KRH75751	Soybean	endoplasmic reticulum	73.46	72.56
KRH62427	Soybean	endoplasmic reticulum	71.6	69.46
Solyc09g011670.2.1	Tomato	cytosol, nucleus	69.75	68.9
VIT_08s0007g01430.t01	Wine grape	cytosol	69.14	68.29
KRH49226	Soybean	cytosol	64.81	66.88
KRH00077	Soybean	cytosol	62.96	64.97
Solyc09g011660.2.1	Tomato	cytosol	65.43	64.63
PGSC0003DMT400030606	Potato	cytosol	65.43	64.24
GSMUA_AchrUn_...	Banana	cytosol	48.77	59.85
PGSC0003DMT400030609	Potato	cytosol	22.84	59.68
EES18332	Sorghum	cytosol	56.79	55.42
Bra032002.1-P	Field mustard	cytosol	53.7	54.72
GSMUA_Achr6P23610_001	Banana	cytosol	53.7	54.38
Solyc10g086670.1.1	Tomato	cytosol	54.94	53.61
PGSC0003DMT400049227	Potato	cytosol	54.94	53.61
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	54.32	53.01
TraesCS1B01G289700.1	Wheat	cytosol	54.32	53.01
TraesCS1A01G280700.1	Wheat	cytosol	54.32	53.01
GSMUA_Achr3P17670_001	Banana	mitochondrion	59.26	51.89
EES03887	Sorghum	cytosol	49.38	50.63
Os01t0849600-01	Rice	cytosol, plastid	48.15	48.15
GSMUA_Achr9P03740_001	Banana	cytosol	48.15	47.27
Zm00001d012382_P002	Maize	cytosol	49.38	41.88
Os05t0453700-01	Rice	cytosol	48.77	41.8
Bra021214.1-P	Field mustard	cytosol	41.98	41.72
Bra022190.1-P	Field mustard	cytosol	41.36	41.1
Bra001649.1-P	Field mustard	cytosol	40.74	40.49
HORVU3Hr1G085660.9	Barley	cytosol	46.3	38.86
Bra038472.1-P	Field mustard	cytosol	17.9	38.16
Zm00001d038351_P004	Maize	cytosol	49.38	33.47

Protein Annotations

EnsemblPlants:Bra014852.1	EnsemblPlants:Bra014852.1-P	EnsemblPlantsGene:Bra014852	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23
PFAM:PF00582	PRINTS:PR01438	SUPFAM:SSF52402	UniParc:UPI00025450B2	UniProt:M4DED1	MapMan:35.2

Description

AT3G53990 (E=4e-077) | universal stress protein (USP) family protein

Coordinates

chrA04:+:3603867..3605409

Molecular Weight (calculated)

18022.7 Da

IEP (calculated)

5.029

GRAVY (calculated)

-0.135

Length

162 amino acids

Sequence
(BLAST)

001: MPKDRKIGIA MDFSESSKNA LKWAFENLAD KGDTLYIIHT LPTSEVDSHN SAWLESGSPL IPLVEFREPE IMEKYGVKID IPVLDMLDTG SRQKEVHVVT
101: KLYWGDAREA LVDAVEDLKL DSIVMGSRGL SALRRIIMGS VSSFVIQHAP CPVTVVKDND SH

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.