Factsheet for TraesCS1D01G279800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G280700.1
TraesCS1B01G289700.1
TraesCS1D01G279800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	TraesCS1A01G280700.1	AT3G53990.1	21798944
AT3G53990.1	TraesCS1B01G289700.1	AT3G53990.1	21798944
AT3G53990.1	TraesCS1D01G279800.1	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G289700.1	Wheat	cytosol	100.0	100.0
TraesCS1A01G280700.1	Wheat	cytosol	98.8	98.8
EES18332	Sorghum	cytosol	77.71	77.71
Os05t0453700-01	Rice	cytosol	74.1	65.08
CDY54032	Canola	plastid	12.65	61.76
GSMUA_Achr6P23610_001	Banana	cytosol	57.83	60.0
KRH75751	Soybean	endoplasmic reticulum	57.83	58.54
PGSC0003DMT400030606	Potato	cytosol	57.23	57.58
CDX73512	Canola	cytosol	54.22	57.32
VIT_08s0007g01430.t01	Wine grape	cytosol	56.63	57.32
Solyc09g011670.2.1	Tomato	cytosol, nucleus	56.63	57.32
Solyc09g011660.2.1	Tomato	cytosol	56.63	57.32
AT3G53990.1	Thale cress	cytosol	54.82	56.88
KRH49226	Soybean	cytosol	53.61	56.69
Bra007038.1-P	Field mustard	cytosol	53.61	56.33
KRH62427	Soybean	endoplasmic reticulum	56.63	56.29
KRH24723	Soybean	nucleus	55.42	56.1
KRH29731	Soybean	endoplasmic reticulum	55.42	56.1
Bra003163.1-P	Field mustard	cytosol	53.61	55.97
CDX67580	Canola	cytosol	53.61	55.97
CDY07565	Canola	cytosol	53.61	55.97
KRH00077	Soybean	cytosol	52.41	55.41
Bra014852.1-P	Field mustard	cytosol	53.01	54.32
CDX76180	Canola	cytosol	53.01	54.32
CDY13163	Canola	cytosol	53.01	54.32
GSMUA_Achr3P17670_001	Banana	mitochondrion	59.64	53.51
Solyc10g086670.1.1	Tomato	cytosol	52.41	52.41
PGSC0003DMT400049227	Potato	cytosol	52.41	52.41
VIT_06s0004g05730.t01	Wine grape	cytosol	50.6	51.22
TraesCS1D01G108300.1	Wheat	peroxisome	50.6	50.6
TraesCS6D01G303600.1	Wheat	cytosol	47.59	47.88
PGSC0003DMT400030609	Potato	cytosol	17.47	46.77
Zm00001d038351_P004	Maize	cytosol	65.66	45.61
TraesCS3D01G091900.1	Wheat	mitochondrion	39.16	40.62
CDY54033	Canola	cytosol	21.08	36.08
TraesCS3D01G092000.1	Wheat	mitochondrion	21.08	13.83

Protein Annotations

Gene3D:3.40.50.620	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005886	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0009408	GO:GO:0009409	GO:GO:0009506	GO:GO:0009628
GO:GO:0009987	GO:GO:0016020	GO:GO:0034337	GO:GO:0061077	InterPro:IPR014729	PFAM:PF00582
PRINTS:PR01438	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	EnsemblPlantsGene:TraesCS1D01G279800
EnsemblPlants:TraesCS1D01G279800.1	InterPro:Universal_stress_UspA	InterPro:UspA	TIGR:cd00293	:	:

Description

No Description!

Coordinates

chr1D:+:377910514..377913671

Molecular Weight (calculated)

18128.8 Da

IEP (calculated)

6.779

GRAVY (calculated)

-0.184

Length

166 amino acids

Sequence
(BLAST)

001: MAGGADADGE RRIGVAMDYS ASSKRALEWA VRNLLRRGDT VVVLHVQRHG GEEAKHAVWA KSGSPLIPLS EYREPEVMKN YGVTCDAEVL DMLDTAARQL
101: ELKVVAKVYW GDAREKLCDA VEEQKIDTIV MGSRGLGTIQ RILLGSVTNY VLSNASCPVT VVKGDR

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.