CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24723	Soybean	nucleus	92.07	92.07
KRH00077	Soybean	cytosol	62.8	65.61
KRH49226	Soybean	cytosol	62.2	64.97
VIT_06s0004g05730.t01	Wine grape	cytosol	64.63	64.63
GSMUA_AchrUn_...	Banana	cytosol	50.61	62.88
KRH75751	Soybean	endoplasmic reticulum	62.8	62.8
EES18332	Sorghum	cytosol	62.8	62.05
GSMUA_Achr6P23610_001	Banana	cytosol	60.37	61.88
KRH62427	Soybean	endoplasmic reticulum	62.8	61.68
Os01t0849600-01	Rice	cytosol, plastid	55.49	56.17
TraesCS1B01G289700.1	Wheat	cytosol	56.1	55.42
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	56.1	55.42
EES03887	Sorghum	cytosol	53.05	55.06
TraesCS1A01G280700.1	Wheat	cytosol	54.88	54.22
GSMUA_Achr3P17670_001	Banana	mitochondrion	60.98	54.05
GSMUA_Achr9P03740_001	Banana	cytosol	51.83	51.52
KRH17289	Soybean	cytosol	51.83	51.2
KRH72936	Soybean	cytosol	44.51	49.66
Zm00001d012382_P002	Maize	cytosol	56.1	48.17
Os05t0453700-01	Rice	cytosol	51.83	44.97
KRH11952	Soybean	cytosol	43.29	43.29
HORVU3Hr1G085660.9	Barley	cytosol	49.39	41.97
Zm00001d038351_P004	Maize	cytosol	56.71	38.91
KRH36979	Soybean	endoplasmic reticulum, extracellular, vacuole	29.88	33.79

Protein Annotations

EMBL:ACUP02006818	EMBL:BT089316	EnsemblPlants:KRH29731	EnsemblPlantsGene:GLYMA_11G134900	EntrezGene:100499728	Gene3D:3.40.50.620
GO:GO:0006950	GO:GO:0008150	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA
PANTHER:PTHR31964	PANTHER:PTHR31964:SF23	PFAM:PF00582	PRINTS:PR01438	ProteinID:KRH29731	ProteinID:KRH29731.1
SUPFAM:SSF52402	UniParc:UPI0001B15919	UniProt:C6SVX3	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr11:+:10291247..10293111

Molecular Weight (calculated)

17736.2 Da

IEP (calculated)

5.782

GRAVY (calculated)

-0.068

Length

164 amino acids

Sequence
(BLAST)

001: MNSDRKIGVA LDFSKGSKIA LKWAIDNLIS NGDTLYIVHT KPSGGSESGN LLWSTTGSPL IPLSEFREKE VMRHYEVDTD AEVLDLLDTA SRQKQVNVVA
101: KLYWGDAREK IVEAVGDLKL DSLVMGSRGL GAIQRVLLGS VTNYVTANAS CPITIVKDSA PSTI

Best Arabidopsis Sequence Match ( AT3G17020.1 )
(BLAST)

001: MAESGGRRIG VAVDFSDCSK KALSWAIDNV VRDGDHLILI TIAHDMNYEE GEMQLWETVG SPFIPMSEFS DAAVMKKYAL KPDAETLDIV NTAARKKTIT
101: VVMKIYWGDP REKICAAAEQ IPLSSLVMGN RGLGGLKRMI MGSVSNHVVN NVACPVTVVK AHI

Arabidopsis Description

AT3g17020/K14A17_14 [Source:UniProtKB/TrEMBL;Acc:Q9LSP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.