CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03887
EES18332

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	EES03887	AT3G53990.1	21798944
AT3G53990.1	EES18332	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0849600-01	Rice	cytosol, plastid	81.65	79.63
Zm00001d012382_P002	Maize	cytosol	83.54	69.11
CDY54032	Canola	plastid	13.29	61.76
EES18332	Sorghum	cytosol	63.92	60.84
Solyc09g011660.2.1	Tomato	cytosol	58.86	56.71
GSMUA_Achr6P23610_001	Banana	cytosol	56.96	56.25
PGSC0003DMT400030606	Potato	cytosol	57.59	55.15
HORVU3Hr1G085660.9	Barley	cytosol	66.46	54.4
VIT_08s0007g01430.t01	Wine grape	cytosol	56.33	54.27
Solyc09g011670.2.1	Tomato	cytosol, nucleus	56.33	54.27
PGSC0003DMT400049227	Potato	cytosol	56.96	54.22
VIT_06s0004g05730.t01	Wine grape	cytosol	55.06	53.05
KRH29731	Soybean	endoplasmic reticulum	55.06	53.05
Solyc10g086670.1.1	Tomato	cytosol	55.7	53.01
CDX73512	Canola	cytosol	52.53	52.87
Bra007038.1-P	Field mustard	cytosol	52.53	52.53
KRH75751	Soybean	endoplasmic reticulum	54.43	52.44
KRH24723	Soybean	nucleus	54.43	52.44
KRH00077	Soybean	cytosol	51.27	51.59
KRH62427	Soybean	endoplasmic reticulum	54.43	51.5
AT3G53990.1	Thale cress	cytosol	51.9	51.25
Bra003163.1-P	Field mustard	cytosol	51.27	50.94
CDX67580	Canola	cytosol	51.27	50.94
GSMUA_Achr3P17670_001	Banana	mitochondrion	59.49	50.81
CDY07565	Canola	cytosol	50.63	50.31
CDY13163	Canola	cytosol	50.63	49.38
CDX76180	Canola	cytosol	50.63	49.38
Bra014852.1-P	Field mustard	cytosol	50.63	49.38
KRH49226	Soybean	cytosol	48.73	49.04
EES19072	Sorghum	cytosol	49.37	46.71
EES05878	Sorghum	cytosol	48.1	46.06
PGSC0003DMT400030609	Potato	cytosol	17.72	45.16
EES02389	Sorghum	cytosol, plastid	40.51	40.51
CDY54033	Canola	cytosol	23.42	38.14
KXG21431	Sorghum	cytosol, mitochondrion, plastid	40.51	34.97
KXG31754	Sorghum	mitochondrion, plastid	16.46	10.16

Protein Annotations

EnsemblPlants:EES03887	EnsemblPlantsGene:SORBI_3003G356800	EntrezGene:8060096	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF58
PFAM:PF00582	PRINTS:PR01438	ProteinID:EES03887	ProteinID:EES03887.1	RefSeq:XP_002458767.1	SUPFAM:SSF52402
UniParc:UPI0001A851EF	UniProt:C5XPT7	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:67502613..67503880

Molecular Weight (calculated)

17775.6 Da

IEP (calculated)

7.968

GRAVY (calculated)

-0.239

Length

158 amino acids

Sequence
(BLAST)

001: MAERRIGVAM DFSPSSKKAL RWATDNLVCK GDTLVLLHIR HHRKDEAKNT LWSRTGSPLI PLEELMDPPV RQRYDMPEDP EVFDTLSAVA RQKELCVVIK
101: MYWGDPREKV CDAVEELHLE SLVMGSRGLG SVQRILLGSV TNYVLSNASC PVTVVKSK

Best Arabidopsis Sequence Match ( AT3G03270.2 )
(BLAST)

001: MGKARTVGVG MDYSPTSKLA LRWAAENLLE DGDTVILIHV QPQNADHTRK ILFEETGSPL IPLEEFREVN LSKQYGLAYD PEVLDVLDTL SRAKKVKVVA
101: KVYWGDPREK LCDAVENLKL DSIVLGSRGL GSLKRILLGS VSNHVVTNAT CPVTVVKAN

Arabidopsis Description

AT3G03270 protein [Source:UniProtKB/TrEMBL;Acc:Q8LFK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.