CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00077
KRH49226
KRH62427
KRH75751

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	KRH00077	AT3G53990.1	21798944
AT3G53990.1	KRH49226	AT3G53990.1	21798944
AT3G53990.1	KRH62427	AT3G53990.1	21798944
AT3G53990.1	KRH75751	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49226	Soybean	cytosol	91.08	91.08
KRH75751	Soybean	endoplasmic reticulum	75.8	72.56
KRH62427	Soybean	endoplasmic reticulum	75.8	71.26
CDY54032	Canola	plastid	14.65	67.65
AT3G53990.1	Thale cress	cytosol	68.15	66.88
Solyc09g011660.2.1	Tomato	cytosol	69.43	66.46
Solyc09g011670.2.1	Tomato	cytosol, nucleus	67.52	64.63
PGSC0003DMT400030606	Potato	cytosol	67.52	64.24
CDX67580	Canola	cytosol	64.97	64.15
Bra003163.1-P	Field mustard	cytosol	64.97	64.15
VIT_08s0007g01430.t01	Wine grape	cytosol	66.88	64.02
Bra007038.1-P	Field mustard	cytosol	64.33	63.92
CDX73512	Canola	cytosol	63.69	63.69
CDY07565	Canola	cytosol	64.33	63.52
CDX76180	Canola	cytosol	64.97	62.96
CDY13163	Canola	cytosol	64.97	62.96
Bra014852.1-P	Field mustard	cytosol	64.97	62.96
PGSC0003DMT400030609	Potato	cytosol	24.84	62.9
KRH29731	Soybean	endoplasmic reticulum	65.61	62.8
KRH24723	Soybean	nucleus	65.61	62.8
GSMUA_AchrUn_...	Banana	cytosol	50.32	59.85
PGSC0003DMT400049227	Potato	cytosol	61.78	58.43
Solyc10g086670.1.1	Tomato	cytosol	59.24	56.02
EES18332	Sorghum	cytosol	58.6	55.42
GSMUA_Achr6P23610_001	Banana	cytosol	55.41	54.38
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	55.41	52.41
TraesCS1B01G289700.1	Wheat	cytosol	55.41	52.41
TraesCS1A01G280700.1	Wheat	cytosol	55.41	52.41
EES03887	Sorghum	cytosol	51.59	51.27
KRH17289	Soybean	cytosol	54.14	51.2
GSMUA_Achr3P17670_001	Banana	mitochondrion	59.87	50.81
KRH72936	Soybean	cytosol	44.59	47.62
Os01t0849600-01	Rice	cytosol, plastid	48.41	46.91
GSMUA_Achr9P03740_001	Banana	cytosol	49.04	46.67
Zm00001d012382_P002	Maize	cytosol	53.5	43.98
Os05t0453700-01	Rice	cytosol	52.23	43.39
KRH11952	Soybean	cytosol	42.68	40.85
HORVU3Hr1G085660.9	Barley	cytosol	47.13	38.34
Zm00001d038351_P004	Maize	cytosol	52.87	34.73
KRH36979	Soybean	endoplasmic reticulum, extracellular, vacuole	28.03	30.34

Protein Annotations

EMBL:ACUP02011374	EMBL:BT092022	EnsemblPlants:KRH00077	EnsemblPlantsGene:GLYMA_18G190700	EntrezGene:100527197	Gene3D:3.40.50.620
GO:GO:0006950	GO:GO:0008150	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA
PANTHER:PTHR31964	PANTHER:PTHR31964:SF23	PFAM:PF00582	PRINTS:PR01438	ProteinID:KRH00077	ProteinID:KRH00077.1
SUPFAM:SSF52402	UniParc:UPI0001B1551C	UniProt:C6T3L1	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr18:-:46033410..46035002

Molecular Weight (calculated)

17447.1 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.102

Length

157 amino acids

Sequence
(BLAST)

001: MVKDRNVGVA LDFSKSSKIA LKWAIENLAD KGQTLYIIHV NPNSSDDRNQ LWVKSGSPLV PLTEFRDAEV TKHYGVQTDA EVLDLLDTAA RQKEVNVVVK
101: LYWGDVREKL LDSIEDLKLN SLVLGSRGLG TIQRMILGSV SNFVMTHAPC PVTIVKE

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.