Factsheet for Os01t0849600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0849600-01
Os05t0453700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	Os01t0849600-01	AT3G53990.1	21798944
AT3G53990.1	Os05t0453700-01	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03887	Sorghum	cytosol	79.63	81.65
Zm00001d012382_P002	Maize	cytosol	79.01	67.02
HORVU3Hr1G085660.9	Barley	cytosol	75.31	63.21
CDY54032	Canola	plastid	12.96	61.76
GSMUA_Achr6P23610_001	Banana	cytosol	57.41	58.12
KRH24723	Soybean	nucleus	58.02	57.32
KRH29731	Soybean	endoplasmic reticulum	56.17	55.49
Solyc09g011660.2.1	Tomato	cytosol	56.17	55.49
PGSC0003DMT400030606	Potato	cytosol	56.17	55.15
VIT_08s0007g01430.t01	Wine grape	cytosol	55.56	54.88
Solyc09g011670.2.1	Tomato	cytosol, nucleus	54.94	54.27
VIT_06s0004g05730.t01	Wine grape	cytosol	53.7	53.05
GSMUA_Achr3P17670_001	Banana	mitochondrion	60.49	52.97
KRH75751	Soybean	endoplasmic reticulum	52.47	51.83
PGSC0003DMT400049227	Potato	cytosol	53.09	51.81
CDX73512	Canola	cytosol	50.0	51.59
Bra003163.1-P	Field mustard	cytosol	50.0	50.94
CDX67580	Canola	cytosol	50.0	50.94
Bra007038.1-P	Field mustard	cytosol	49.38	50.63
AT3G53990.1	Thale cress	cytosol	50.0	50.62
Solyc10g086670.1.1	Tomato	cytosol	51.85	50.6
CDY07565	Canola	cytosol	49.38	50.31
KRH62427	Soybean	endoplasmic reticulum	51.85	50.3
Os05t0157200-01	Rice	cytosol, nucleus, plasma membrane, plastid	50.62	49.1
Os02t0773200-01	Rice	cytosol	49.38	48.48
KRH00077	Soybean	cytosol	46.91	48.41
Bra014852.1-P	Field mustard	cytosol	48.15	48.15
CDX76180	Canola	cytosol	48.15	48.15
CDY13163	Canola	cytosol	48.15	48.15
KRH49226	Soybean	cytosol	45.68	47.13
PGSC0003DMT400030609	Potato	cytosol	17.28	45.16
Os05t0453700-01	Rice	cytosol	51.85	44.44
CDY54033	Canola	cytosol	21.6	36.08
Os05t0170200-02	Rice	extracellular	41.98	33.5
Os01t0170600-01	Rice	extracellular	17.9	10.66

Protein Annotations

Gene3D:3.40.50.620	MapMan:35.2	EntrezGene:4324861	EMBL:AK108159	ProteinID:BAB89509.1	ProteinID:BAF06724.1
ProteinID:BAS75233.1	ProteinID:EAZ14154.1	GO:GO:0006950	GO:GO:0008150	InterPro:IPR014729	EnsemblPlantsGene:Os01g0849600
EnsemblPlants:Os01t0849600-01	PFAM:PF00582	PRINTS:PR01438	PANTHER:PTHR31964	PANTHER:PTHR31964:SF58	UniProt:Q8S292
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	UniParc:UPI00000AB0F5	InterPro:Universal_stress_UspA	InterPro:UspA	RefSeq:XP_015632009.1

Description

Similar to ENOD18 protein (Fragment). (Os01t0849600-01)

Coordinates

chr1:-:36496934..36498132

Molecular Weight (calculated)

18030.8 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.204

Length

162 amino acids

Sequence
(BLAST)

001: MTEAGGERRI GVAMDFSPSS KKALQWAADN LLRKGDTLVL LHIRHHGRDE AKNVLWSHTG SPLIPLEELM ETAVRQRYDI PSDEEVFDML NAVSREKELS
101: VVLKMYWGEP REKVCEAVGE LNLESLVMGS RGLGQIQRIL LGSVTNYVLS NASCPVTVVK AK

Best Arabidopsis Sequence Match ( AT3G03270.2 )
(BLAST)

001: MGKARTVGVG MDYSPTSKLA LRWAAENLLE DGDTVILIHV QPQNADHTRK ILFEETGSPL IPLEEFREVN LSKQYGLAYD PEVLDVLDTL SRAKKVKVVA
101: KVYWGDPREK LCDAVENLKL DSIVLGSRGL GSLKRILLGS VSNHVVTNAT CPVTVVKAN

Arabidopsis Description

AT3G03270 protein [Source:UniProtKB/TrEMBL;Acc:Q8LFK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.