Factsheet for Bra007038.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 2
unclear 1
plastid 1
plasma membrane 1
golgi 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003163.1-P
Bra007038.1-P
Bra014852.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	Bra003163.1-P	AT3G53990.1	21798944
AT3G53990.1	Bra007038.1-P	AT3G53990.1	21798944
AT3G53990.1	Bra014852.1-P	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54032	Canola	plastid	21.52	100.0
CDX73512	Canola	cytosol	98.73	99.36
AT3G53990.1	Thale cress	cytosol	87.34	86.25
Bra003163.1-P	Field mustard	cytosol	86.71	86.16
Bra014852.1-P	Field mustard	cytosol	87.97	85.8
KRH75751	Soybean	endoplasmic reticulum	74.05	71.34
KRH62427	Soybean	endoplasmic reticulum	73.42	69.46
Solyc09g011670.2.1	Tomato	cytosol, nucleus	71.52	68.9
KRH49226	Soybean	cytosol	66.46	66.88
Solyc09g011660.2.1	Tomato	cytosol	68.99	66.46
PGSC0003DMT400030606	Potato	cytosol	68.35	65.45
VIT_08s0007g01430.t01	Wine grape	cytosol	67.72	65.24
KRH00077	Soybean	cytosol	63.92	64.33
GSMUA_AchrUn_...	Banana	cytosol	50.0	59.85
PGSC0003DMT400030609	Potato	cytosol	23.42	59.68
EES18332	Sorghum	cytosol	59.49	56.63
GSMUA_Achr6P23610_001	Banana	cytosol	56.33	55.62
Bra032002.1-P	Field mustard	cytosol	54.43	54.09
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	56.33	53.61
TraesCS1B01G289700.1	Wheat	cytosol	56.33	53.61
PGSC0003DMT400049227	Potato	cytosol	56.33	53.61
Solyc10g086670.1.1	Tomato	cytosol	56.33	53.61
TraesCS1A01G280700.1	Wheat	cytosol	55.7	53.01
EES03887	Sorghum	cytosol	52.53	52.53
GSMUA_Achr3P17670_001	Banana	mitochondrion	59.49	50.81
Os01t0849600-01	Rice	cytosol, plastid	50.63	49.38
GSMUA_Achr9P03740_001	Banana	cytosol	50.0	47.88
Bra022190.1-P	Field mustard	cytosol	44.94	43.56
Zm00001d012382_P002	Maize	cytosol	52.53	43.46
Bra001649.1-P	Field mustard	cytosol	44.3	42.94
Bra021214.1-P	Field mustard	cytosol	43.67	42.33
Os05t0453700-01	Rice	cytosol	50.63	42.33
Bra038472.1-P	Field mustard	cytosol	19.62	40.79
HORVU3Hr1G085660.9	Barley	cytosol	47.47	38.86
Zm00001d038351_P004	Maize	cytosol	51.9	34.31

Protein Annotations

EnsemblPlants:Bra007038.1	EnsemblPlants:Bra007038.1-P	EnsemblPlantsGene:Bra007038	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23
PFAM:PF00582	PRINTS:PR01438	SUPFAM:SSF52402	UniParc:UPI0002542FA8	UniProt:M4CS46	MapMan:35.2

Description

AT3G53990 (E=2e-075) | universal stress protein (USP) family protein

Coordinates

chrA09:-:26973789..26975053

Molecular Weight (calculated)

17521.4 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.080

Length

158 amino acids

Sequence
(BLAST)

001: MPKDRKIGIA MDFSESSKNA LRWAIDNLAD KGDTFYIIHA LPTSEAGPRN SLWLKSGSPL IPLVEFREPE TMEKYGVKID IPVLDLLDTG SRQKEIHVVT
101: KIYWGDAREK LVDAVKSLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKD

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.