Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0849600-01 | |
| Os05t0453700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53990.1 | Os01t0849600-01 | AT3G53990.1 | 21798944 |
| AT3G53990.1 | Os05t0453700-01 | AT3G53990.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G279800.1 | Wheat | cytosol, golgi, unclear | 65.08 | 74.1 |
| TraesCS1B01G289700.1 | Wheat | cytosol | 65.08 | 74.1 |
| TraesCS1A01G280700.1 | Wheat | cytosol | 64.02 | 72.89 |
| EES18332 | Sorghum | cytosol | 60.32 | 68.67 |
| KRH24723 | Soybean | nucleus | 46.03 | 53.05 |
| KRH00077 | Soybean | cytosol | 43.39 | 52.23 |
| Bra003163.1-P | Field mustard | cytosol | 43.92 | 52.2 |
| CDX67580 | Canola | cytosol | 43.92 | 52.2 |
| CDY07565 | Canola | cytosol | 43.92 | 52.2 |
| AT3G53990.1 | Thale cress | cytosol | 43.92 | 51.88 |
| GSMUA_Achr6P23610_001 | Banana | cytosol | 43.92 | 51.88 |
| Os01t0849600-01 | Rice | cytosol, plastid | 44.44 | 51.85 |
| VIT_08s0007g01430.t01 | Wine grape | cytosol | 44.97 | 51.83 |
| KRH29731 | Soybean | endoplasmic reticulum | 44.97 | 51.83 |
| CDX73512 | Canola | cytosol | 42.86 | 51.59 |
| KRH49226 | Soybean | cytosol | 42.86 | 51.59 |
| KRH75751 | Soybean | endoplasmic reticulum | 44.44 | 51.22 |
| PGSC0003DMT400030606 | Potato | cytosol | 44.44 | 50.91 |
| Bra007038.1-P | Field mustard | cytosol | 42.33 | 50.63 |
| Solyc09g011670.2.1 | Tomato | cytosol, nucleus | 43.92 | 50.61 |
| KRH62427 | Soybean | endoplasmic reticulum | 43.39 | 49.1 |
| Solyc09g011660.2.1 | Tomato | cytosol | 42.33 | 48.78 |
| VIT_06s0004g05730.t01 | Wine grape | cytosol | 42.33 | 48.78 |
| CDY13163 | Canola | cytosol | 41.8 | 48.77 |
| CDX76180 | Canola | cytosol | 41.8 | 48.77 |
| Bra014852.1-P | Field mustard | cytosol | 41.8 | 48.77 |
| GSMUA_Achr3P17670_001 | Banana | mitochondrion | 47.09 | 48.11 |
| Zm00001d038351_P004 | Maize | cytosol | 58.73 | 46.44 |
| Os05t0157200-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 40.74 | 46.11 |
| PGSC0003DMT400049227 | Potato | cytosol | 38.62 | 43.98 |
| Solyc10g086670.1.1 | Tomato | cytosol | 38.62 | 43.98 |
| PGSC0003DMT400030609 | Potato | cytosol | 14.29 | 43.55 |
| Os02t0773200-01 | Rice | cytosol | 36.51 | 41.82 |
| CDY54033 | Canola | cytosol | 19.58 | 38.14 |
| CDY54032 | Canola | plastid | 6.35 | 35.29 |
| Os05t0170200-02 | Rice | extracellular | 35.98 | 33.5 |
| Os01t0170600-01 | Rice | extracellular | 13.23 | 9.19 |
Protein Annotations
| EMBL:AK073600 | EnsemblPlants:Os05t0453700-01 | EnsemblPlantsGene:Os05g0453700 | EntrezGene:4338972 | Gene3D:3.40.50.620 | GO:GO:0006950 |
| GO:GO:0008150 | InterPro:IPR014729 | InterPro:Rossmann-like_a/b/a_fold | InterPro:UspA | PANTHER:PTHR31964 | PANTHER:PTHR31964:SF23 |
| PFAM:PF00582 | ProteinID:BAS94344.1 | RefSeq:XP_015637838.1 | SEG:seg | SUPFAM:SSF52402 | UniParc:UPI000188AE0B |
| UniProt:B7EME6 | MapMan:35.2 | : | : | : | : |
Description
Similar to USP family protein. (Os05t0453700-01);Similar to ENOD18 protein (Fragment). (Os05t0453700-02)
Coordinates
chr5:+:22276282..22278726
Molecular Weight (calculated)
20901.2 Da
IEP (calculated)
6.232
GRAVY (calculated)
-0.133
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGRADDE RRIGVAMDYS ASSKRALDWA IANLLRRGDH LVVLHVLHHG GEEAKHALWG KSGSPLIPLS EFRDPTAMQQ YGVHCDAEVL DMLDTAARQL
101: ELTVVAKLYW GDAREKLCDA VEEQKIDTLV MGSRGLGSIQ RYNSYFCLQC CCLINQESKL QALTIELAFG PVANIPVQID KLCRERCTA
101: ELTVVAKLYW GDAREKLCDA VEEQKIDTLV MGSRGLGSIQ RYNSYFCLQC CCLINQESKL QALTIELAFG PVANIPVQID KLCRERCTA
001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE
Arabidopsis Description
AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.