Factsheet for Solyc10g086670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g011660.2.1
Solyc09g011670.2.1
Solyc10g086670.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	Solyc09g011660.2.1	AT3G53990.1	21798944
AT3G53990.1	Solyc09g011670.2.1	AT3G53990.1	21798944
AT3G53990.1	Solyc10g086670.1.1	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049227	Potato	cytosol	95.78	95.78
Solyc09g011660.2.1	Tomato	cytosol	68.07	68.9
KRH75751	Soybean	endoplasmic reticulum	65.06	65.85
KRH62427	Soybean	endoplasmic reticulum	63.86	63.47
VIT_08s0007g01430.t01	Wine grape	cytosol	62.05	62.8
Solyc09g011670.2.1	Tomato	cytosol, nucleus	61.45	62.2
KRH00077	Soybean	cytosol	56.02	59.24
KRH49226	Soybean	cytosol	56.02	59.24
AT3G53990.1	Thale cress	cytosol	54.82	56.88
Bra007038.1-P	Field mustard	cytosol	53.61	56.33
EES03887	Sorghum	cytosol	53.01	55.7
GSMUA_Achr6P23610_001	Banana	cytosol	53.01	55.0
Bra014852.1-P	Field mustard	cytosol	53.61	54.94
Bra003163.1-P	Field mustard	cytosol	52.41	54.72
EES18332	Sorghum	cytosol	53.61	53.61
TraesCS1A01G280700.1	Wheat	cytosol	52.41	52.41
TraesCS1B01G289700.1	Wheat	cytosol	52.41	52.41
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	52.41	52.41
GSMUA_AchrUn_...	Banana	cytosol	41.57	52.27
Os01t0849600-01	Rice	cytosol, plastid	50.6	51.85
GSMUA_Achr3P17670_001	Banana	mitochondrion	56.63	50.81
Solyc04g014600.2.1	Tomato	nucleus	46.99	48.15
GSMUA_Achr9P03740_001	Banana	cytosol	45.78	46.06
Zm00001d012382_P002	Maize	cytosol	50.6	43.98
Solyc01g059930.2.1	Tomato	cytosol, extracellular	39.16	39.88
Os05t0453700-01	Rice	cytosol	43.98	38.62
CDY54033	Canola	cytosol	22.29	38.14
HORVU3Hr1G085660.9	Barley	cytosol	43.37	37.31
Zm00001d038351_P004	Maize	cytosol	46.99	32.64

Protein Annotations

EnsemblPlants:Solyc10g086670.1.1	EnsemblPlantsGene:Solyc10g086670.1	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150	InterPro:IPR014729
InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23	PFAM:PF00582
PRINTS:PR01438	SUPFAM:SSF52402	UniParc:UPI0002769625	UniProt:K4D498	MapMan:35.2	:

Description

No Description!

Coordinates

chr10:-:65447400..65448759

Molecular Weight (calculated)

18780.6 Da

IEP (calculated)

7.570

GRAVY (calculated)

-0.291

Length

166 amino acids

Sequence
(BLAST)

001: MGNKEKTIGV AVDFSRSSKE ALKWTVENLA EKSDTVYLIH IKTHTLSESR DQLWAKTGSP LIPWVEFRDP EVMKYYDIKK TDVQVVDLLD AATKQKQINI
101: VAKVYWGDAR EKVCDSIEDL RLDSLVMGSR GLSAIQRIML GSVTNYVLNN AACPVTIVKD PDFHKH

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.