Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g01430.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53990.1 | VIT_08s0007g01430.t01 | AT3G53990.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030606 | Potato | cytosol | 75.0 | 74.55 |
| Solyc09g011670.2.1 | Tomato | cytosol, nucleus | 74.39 | 74.39 |
| Solyc09g011660.2.1 | Tomato | cytosol | 74.39 | 74.39 |
| KRH75751 | Soybean | endoplasmic reticulum | 73.17 | 73.17 |
| KRH62427 | Soybean | endoplasmic reticulum | 72.56 | 71.26 |
| AT3G53990.1 | Thale cress | cytosol | 68.9 | 70.62 |
| Bra014852.1-P | Field mustard | cytosol | 68.29 | 69.14 |
| CDX76180 | Canola | cytosol | 68.29 | 69.14 |
| CDY13163 | Canola | cytosol | 68.29 | 69.14 |
| Bra003163.1-P | Field mustard | cytosol | 66.46 | 68.55 |
| CDX67580 | Canola | cytosol | 66.46 | 68.55 |
| CDX73512 | Canola | cytosol | 65.24 | 68.15 |
| CDY07565 | Canola | cytosol | 65.85 | 67.92 |
| Bra007038.1-P | Field mustard | cytosol | 65.24 | 67.72 |
| VIT_06s0004g05730.t01 | Wine grape | cytosol | 67.68 | 67.68 |
| KRH49226 | Soybean | cytosol | 64.63 | 67.52 |
| KRH00077 | Soybean | cytosol | 64.02 | 66.88 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.66 | 66.67 |
| GSMUA_Achr6P23610_001 | Banana | cytosol | 64.63 | 66.25 |
| PGSC0003DMT400049227 | Potato | cytosol | 64.02 | 63.25 |
| PGSC0003DMT400030609 | Potato | cytosol | 23.78 | 62.9 |
| Solyc10g086670.1.1 | Tomato | cytosol | 62.8 | 62.05 |
| CDY54032 | Canola | plastid | 12.8 | 61.76 |
| EES18332 | Sorghum | cytosol | 61.59 | 60.84 |
| GSMUA_Achr3P17670_001 | Banana | mitochondrion | 64.02 | 56.76 |
| TraesCS1B01G289700.1 | Wheat | cytosol | 57.32 | 56.63 |
| TraesCS1D01G279800.1 | Wheat | cytosol, golgi, unclear | 57.32 | 56.63 |
| EES03887 | Sorghum | cytosol | 54.27 | 56.33 |
| Os01t0849600-01 | Rice | cytosol, plastid | 54.88 | 55.56 |
| TraesCS1A01G280700.1 | Wheat | cytosol | 56.1 | 55.42 |
| GSMUA_Achr9P03740_001 | Banana | cytosol | 55.49 | 55.15 |
| VIT_04s0079g00610.t01 | Wine grape | cytosol | 54.27 | 54.27 |
| Zm00001d012382_P002 | Maize | cytosol | 53.66 | 46.07 |
| Os05t0453700-01 | Rice | cytosol | 51.83 | 44.97 |
| VIT_05s0077g01070.t01 | Wine grape | cytosol | 45.12 | 44.85 |
| HORVU3Hr1G085660.9 | Barley | cytosol | 50.0 | 42.49 |
| Zm00001d038351_P004 | Maize | cytosol | 52.44 | 35.98 |
Protein Annotations
| EntrezGene:100259655 | wikigene:100259655 | Gene3D:3.40.50.620 | MapMan:35.2 | UniProt:A5C9Q0 | EMBL:AM487225 |
| ProteinID:CAN81966 | ProteinID:CAN81966.1 | ProteinID:CBI30465 | ProteinID:CBI30465.3 | EMBL:FN595991 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0009408 |
| GO:GO:0009409 | GO:GO:0009506 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0034337 |
| GO:GO:0061077 | InterPro:IPR014729 | EntrezGene:LOC100259655 | wikigene:LOC100259655 | PFAM:PF00582 | PRINTS:PR01438 |
| PANTHER:PTHR31964 | PANTHER:PTHR31964:SF23 | InterPro:Rossmann-like_a/b/a_fold | SUPFAM:SSF52402 | TIGR:TC55472 | UniParc:UPI0001524E43 |
| InterPro:Universal_stress_UspA | InterPro:UspA | ArrayExpress:VIT_08s0007g01430 | EnsemblPlantsGene:VIT_08s0007g01430 | EnsemblPlants:VIT_08s0007g01430.t01 | unigene:Vvi.7809 |
| RefSeq:XP_002275745 | RefSeq:XP_002275745.1 | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:15501959..15503083
Molecular Weight (calculated)
18240.0 Da
IEP (calculated)
7.506
GRAVY (calculated)
-0.226
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGDRKIGVA MDFSSSSKLA LQWAIDNLAD KGDLLYIIHI KSSSGDESRD VLWTTHGSPL IPLTEFRQPE IMKKYGVKTD IEVLDTLDTA SRQKEVKIVT
101: KLYWGDARDK LCEAVEDLKL DSLVMGSRGL STIRRILLGS VTNYVMTNAT CPVTIVKDPS SHKQ
101: KLYWGDARDK LCEAVEDLKL DSLVMGSRGL STIRRILLGS VTNYVMTNAT CPVTIVKDPS SHKQ
001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE
Arabidopsis Description
AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.