Factsheet for VIT_04s0079g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50688	Canola	cytosol	67.07	69.18
Bra032002.1-P	Field mustard	cytosol	66.46	68.55
CDY43136	Canola	cytosol	66.46	68.55
Solyc04g014600.2.1	Tomato	nucleus	65.85	66.67
PGSC0003DMT400060724	Potato	cytosol	65.24	66.05
KRH17289	Soybean	cytosol	65.85	65.06
KRH72936	Soybean	cytosol	57.93	64.63
GSMUA_Achr10P...	Banana	cytosol	59.76	60.49
Zm00001d018229_P001	Maize	mitochondrion	56.1	55.76
VIT_08s0007g01430.t01	Wine grape	cytosol	54.27	54.27
VIT_06s0004g05730.t01	Wine grape	cytosol	53.05	53.05
Os02t0773200-01	Rice	cytosol	53.05	52.73
EES05878	Sorghum	cytosol	53.05	52.73
TraesCS6A01G323800.1	Wheat	cytosol, mitochondrion, plastid	51.83	51.52
TraesCS6B01G354400.1	Wheat	golgi	51.83	51.52
TraesCS6D01G303600.1	Wheat	cytosol	51.83	51.52
HORVU6Hr1G079150.1	Barley	cytosol, mitochondrion, plastid	50.61	50.3
AT3G03270.1	Thale cress	cytosol	60.98	49.75
VIT_05s0077g01070.t01	Wine grape	cytosol	46.34	46.06

Protein Annotations

EntrezGene:100251331	wikigene:100251331	Gene3D:3.40.50.620	MapMan:35.2	ProteinID:CBI27357	ProteinID:CBI27357.3
UniProt:D7TA35	EMBL:FN595753	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006950	GO:GO:0008150
GO:GO:0016020	GO:GO:0043621	InterPro:IPR014729	EntrezGene:LOC100251331	wikigene:LOC100251331	PFAM:PF00582
PRINTS:PR01438	PANTHER:PTHR31964	PANTHER:PTHR31964:SF40	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	TIGR:TC52578
UniParc:UPI00015CA896	InterPro:Universal_stress_UspA	InterPro:UspA	ArrayExpress:VIT_04s0079g00610	EnsemblPlantsGene:VIT_04s0079g00610	EnsemblPlants:VIT_04s0079g00610.t01
RefSeq:XP_002271154	RefSeq:XP_002271154.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:11299207..11300475

Molecular Weight (calculated)

17817.6 Da

IEP (calculated)

7.290

GRAVY (calculated)

-0.079

Length

164 amino acids

Sequence
(BLAST)

001: MGKARAIGVG MDNSANSKSA LRWAVDNLID AEDCLILIYV QSPKSEHPKK QLFEDTGSPL VPLEEFRDIN LSKQYGLNPD PEVLDILDTV ARSKGAKVVA
101: KVYWGDPREK LCDAVDDLKL DCLVLGSRGL GVLRRILLGS VSNYVMVHAS CPVTVVKGTP ATKP

Best Arabidopsis Sequence Match ( AT3G03270.2 )
(BLAST)

001: MGKARTVGVG MDYSPTSKLA LRWAAENLLE DGDTVILIHV QPQNADHTRK ILFEETGSPL IPLEEFREVN LSKQYGLAYD PEVLDVLDTL SRAKKVKVVA
101: KVYWGDPREK LCDAVENLKL DSIVLGSRGL GSLKRILLGS VSNHVVTNAT CPVTVVKAN

Arabidopsis Description

AT3G03270 protein [Source:UniProtKB/TrEMBL;Acc:Q8LFK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.