Factsheet for TraesCS6B01G354400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G323800.1	Wheat	cytosol, mitochondrion, plastid	100.0	100.0
TraesCS6D01G303600.1	Wheat	cytosol	99.39	99.39
HORVU6Hr1G079150.1	Barley	cytosol, mitochondrion, plastid	98.79	98.79
Os02t0773200-01	Rice	cytosol	89.09	89.09
EES05878	Sorghum	cytosol	89.09	89.09
Zm00001d018229_P001	Maize	mitochondrion	84.24	84.24
CDY50688	Canola	cytosol	57.58	59.75
CDY43136	Canola	cytosol	57.58	59.75
Bra032002.1-P	Field mustard	cytosol	57.58	59.75
GSMUA_Achr10P...	Banana	cytosol	58.18	59.26
PGSC0003DMT400060724	Potato	cytosol	53.33	54.32
Solyc04g014600.2.1	Tomato	nucleus	53.33	54.32
KRH17289	Soybean	cytosol	53.94	53.61
VIT_04s0079g00610.t01	Wine grape	cytosol	51.52	51.83
KRH72936	Soybean	cytosol	44.24	49.66
TraesCS1B01G289700.1	Wheat	cytosol	47.88	47.59
TraesCS3B01G107200.1	Wheat	mitochondrion	41.82	43.12
AT3G03270.1	Thale cress	cytosol	49.7	40.8
TraesCS1B01G124100.1	Wheat	cytosol	37.58	31.47

Protein Annotations

Gene3D:3.40.50.620	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006950	GO:GO:0008150
GO:GO:0016020	GO:GO:0043621	InterPro:IPR014729	PFAM:PF00582	PRINTS:PR01438	PANTHER:PTHR31964
PANTHER:PTHR31964:SF40	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	EnsemblPlantsGene:TraesCS6B01G354400	EnsemblPlants:TraesCS6B01G354400.1	InterPro:Universal_stress_UspA
InterPro:UspA	TIGR:cd00293	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:620265033..620265871

Molecular Weight (calculated)

17770.7 Da

IEP (calculated)

9.178

GRAVY (calculated)

0.021

Length

165 amino acids

Sequence
(BLAST)

001: MAAGKRTIGL AMDYSPSSKA ATRWVVENLV KAGDRIILIH VLPKGADASH KGLWKSTGSP LIPLLEFMEM NVQARYGVNP DKEVLEILQA ESKSKQVEIL
101: AKIYWGDARE KLCEAVDDLK VDSVVLGCRG LGPLKRALLG SVSNYVVNNA TCPVTVVRGP NGSLA

Best Arabidopsis Sequence Match ( AT3G03270.2 )
(BLAST)

001: MGKARTVGVG MDYSPTSKLA LRWAAENLLE DGDTVILIHV QPQNADHTRK ILFEETGSPL IPLEEFREVN LSKQYGLAYD PEVLDVLDTL SRAKKVKVVA
101: KVYWGDPREK LCDAVENLKL DSIVLGSRGL GSLKRILLGS VSNHVVTNAT CPVTVVKAN

Arabidopsis Description

AT3G03270 protein [Source:UniProtKB/TrEMBL;Acc:Q8LFK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.