Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G354400.1 | Wheat | golgi | 100.0 | 100.0 |
| TraesCS6D01G303600.1 | Wheat | cytosol | 99.39 | 99.39 |
| HORVU6Hr1G079150.1 | Barley | cytosol, mitochondrion, plastid | 98.79 | 98.79 |
| EES05878 | Sorghum | cytosol | 89.09 | 89.09 |
| Os02t0773200-01 | Rice | cytosol | 89.09 | 89.09 |
| Zm00001d018229_P001 | Maize | mitochondrion | 84.24 | 84.24 |
| Bra032002.1-P | Field mustard | cytosol | 57.58 | 59.75 |
| CDY50688 | Canola | cytosol | 57.58 | 59.75 |
| CDY43136 | Canola | cytosol | 57.58 | 59.75 |
| GSMUA_Achr10P... | Banana | cytosol | 58.18 | 59.26 |
| PGSC0003DMT400060724 | Potato | cytosol | 53.33 | 54.32 |
| Solyc04g014600.2.1 | Tomato | nucleus | 53.33 | 54.32 |
| KRH17289 | Soybean | cytosol | 53.94 | 53.61 |
| VIT_04s0079g00610.t01 | Wine grape | cytosol | 51.52 | 51.83 |
| KRH72936 | Soybean | cytosol | 44.24 | 49.66 |
| TraesCS1A01G280700.1 | Wheat | cytosol | 47.27 | 46.99 |
| TraesCS1A01G106600.1 | Wheat | peroxisome | 45.45 | 45.18 |
| AT3G03270.1 | Thale cress | cytosol | 49.7 | 40.8 |
| TraesCS3A01G092000.1 | Wheat | mitochondrion | 38.79 | 40.76 |
| TraesCS3A01G092100.1 | Wheat | mitochondrion | 17.58 | 11.2 |
Protein Annotations
| Gene3D:3.40.50.620 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0043621 | InterPro:IPR014729 | PFAM:PF00582 | PRINTS:PR01438 | PANTHER:PTHR31964 |
| PANTHER:PTHR31964:SF40 | InterPro:Rossmann-like_a/b/a_fold | SUPFAM:SSF52402 | EnsemblPlantsGene:TraesCS6A01G323800 | EnsemblPlants:TraesCS6A01G323800.1 | InterPro:Universal_stress_UspA |
| InterPro:UspA | TIGR:cd00293 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:557094125..557094992
Molecular Weight (calculated)
17770.7 Da
IEP (calculated)
9.178
GRAVY (calculated)
0.021
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGKRTIGL AMDYSPSSKA ATRWVVENLV KAGDRIILIH VLPKGADASH KGLWKSTGSP LIPLLEFMEM NVQARYGVNP DKEVLEILQA ESKSKQVEIL
101: AKIYWGDARE KLCEAVDDLK VDSVVLGCRG LGPLKRALLG SVSNYVVNNA TCPVTVVRGP NGSLA
101: AKIYWGDARE KLCEAVDDLK VDSVVLGCRG LGPLKRALLG SVSNYVVNNA TCPVTVVRGP NGSLA
001: MGKARTVGVG MDYSPTSKLA LRWAAENLLE DGDTVILIHV QPQNADHTRK ILFEETGSPL IPLEEFREVN LSKQYGLAYD PEVLDVLDTL SRAKKVKVVA
101: KVYWGDPREK LCDAVENLKL DSIVLGSRGL GSLKRILLGS VSNHVVTNAT CPVTVVKAN
101: KVYWGDPREK LCDAVENLKL DSIVLGSRGL GSLKRILLGS VSNHVVTNAT CPVTVVKAN
Arabidopsis Description
AT3G03270 protein [Source:UniProtKB/TrEMBL;Acc:Q8LFK2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.