CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00077
KRH49226
KRH62427
KRH75751

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	KRH00077	AT3G53990.1	21798944
AT3G53990.1	KRH49226	AT3G53990.1	21798944
AT3G53990.1	KRH62427	AT3G53990.1	21798944
AT3G53990.1	KRH75751	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75751	Soybean	endoplasmic reticulum	90.42	92.07
KRH49226	Soybean	cytosol	73.05	77.71
KRH00077	Soybean	cytosol	71.26	75.8
Solyc09g011660.2.1	Tomato	cytosol	72.46	73.78
AT3G53990.1	Thale cress	cytosol	70.66	73.75
CDY54032	Canola	plastid	14.97	73.53
Bra007038.1-P	Field mustard	cytosol	69.46	73.42
PGSC0003DMT400030606	Potato	cytosol	72.46	73.33
CDX73512	Canola	cytosol	68.86	73.25
VIT_08s0007g01430.t01	Wine grape	cytosol	71.26	72.56
Bra003163.1-P	Field mustard	cytosol	68.86	72.33
CDY07565	Canola	cytosol	68.86	72.33
CDX67580	Canola	cytosol	68.86	72.33
Solyc09g011670.2.1	Tomato	cytosol, nucleus	70.66	71.95
CDX76180	Canola	cytosol	69.46	71.6
Bra014852.1-P	Field mustard	cytosol	69.46	71.6
CDY13163	Canola	cytosol	68.86	70.99
PGSC0003DMT400049227	Potato	cytosol	64.07	64.46
Solyc10g086670.1.1	Tomato	cytosol	63.47	63.86
GSMUA_AchrUn_...	Banana	cytosol	50.3	63.64
PGSC0003DMT400030609	Potato	cytosol	23.35	62.9
KRH24723	Soybean	nucleus	61.68	62.8
KRH29731	Soybean	endoplasmic reticulum	61.68	62.8
GSMUA_Achr6P23610_001	Banana	cytosol	58.08	60.62
GSMUA_Achr3P17670_001	Banana	mitochondrion	63.47	57.3
EES18332	Sorghum	cytosol	56.89	57.23
TraesCS1B01G289700.1	Wheat	cytosol	56.29	56.63
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	56.29	56.63
TraesCS1A01G280700.1	Wheat	cytosol	55.09	55.42
EES03887	Sorghum	cytosol	51.5	54.43
KRH17289	Soybean	cytosol	52.69	53.01
GSMUA_Achr9P03740_001	Banana	cytosol	51.5	52.12
Os01t0849600-01	Rice	cytosol, plastid	50.3	51.85
KRH72936	Soybean	cytosol	43.11	48.98
Zm00001d012382_P002	Maize	cytosol	50.3	43.98
Os05t0453700-01	Rice	cytosol	49.1	43.39
KRH11952	Soybean	cytosol	41.32	42.07
HORVU3Hr1G085660.9	Barley	cytosol	47.31	40.93
Zm00001d038351_P004	Maize	cytosol	51.5	35.98
KRH36979	Soybean	endoplasmic reticulum, extracellular, vacuole	25.75	29.66

Protein Annotations

EMBL:ACUP02002270	EnsemblPlants:KRH62427	EnsemblPlantsGene:GLYMA_04G107900	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23
PFAM:PF00582	PRINTS:PR01438	ProteinID:KRH62427	ProteinID:KRH62427.1	SEG:seg	SUPFAM:SSF52402
UniParc:UPI00023C1219	UniProt:I1JLY5	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:11421366..11422972

Molecular Weight (calculated)

18679.5 Da

IEP (calculated)

5.747

GRAVY (calculated)

-0.196

Length

167 amino acids

Sequence
(BLAST)

001: MAKDRTIGVA LDFSKSSKNA LKWALENLAD KGDTIYVIHI NSNSLDESRN KLWAESGSPL IPLVEFREPE IMKKYDVQID IEVLDLLDTA SRQKEIHIVT
101: KIYWGDAREK LLDAIEDLKL DSLVMGSRGL STIQRIILGS VSNFVMTHAS CPVTIVKETS KETSSSK

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.