Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- peroxisome 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400030606 | |
| PGSC0003DMT400030609 | |
| PGSC0003DMT400049227 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53990.1 | PGSC0003DMT400030606 | AT3G53990.1 | 21798944 |
| AT3G53990.1 | PGSC0003DMT400030609 | AT3G53990.1 | 21798944 |
| AT3G53990.1 | PGSC0003DMT400049227 | AT3G53990.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54033 | Canola | cytosol | 53.23 | 34.02 |
| PGSC0003DMT400030606 | Potato | cytosol | 69.35 | 26.06 |
| KRH49226 | Soybean | cytosol | 62.9 | 24.84 |
| KRH00077 | Soybean | cytosol | 62.9 | 24.84 |
| Bra003163.1-P | Field mustard | cytosol | 62.9 | 24.53 |
| VIT_08s0007g01430.t01 | Wine grape | cytosol | 62.9 | 23.78 |
| KRH75751 | Soybean | endoplasmic reticulum | 62.9 | 23.78 |
| AT3G53990.1 | Thale cress | cytosol | 61.29 | 23.75 |
| Bra007038.1-P | Field mustard | cytosol | 59.68 | 23.42 |
| KRH62427 | Soybean | endoplasmic reticulum | 62.9 | 23.35 |
| Bra014852.1-P | Field mustard | cytosol | 59.68 | 22.84 |
| PGSC0003DMT400049227 | Potato | cytosol | 59.68 | 22.29 |
| GSMUA_Achr6P23610_001 | Banana | cytosol | 54.84 | 21.25 |
| GSMUA_AchrUn_... | Banana | cytosol | 41.94 | 19.7 |
| EES18332 | Sorghum | cytosol | 50.0 | 18.67 |
| PGSC0003DMT400060724 | Potato | cytosol | 48.39 | 18.52 |
| TraesCS1A01G280700.1 | Wheat | cytosol | 48.39 | 18.07 |
| GSMUA_Achr3P17670_001 | Banana | mitochondrion | 53.23 | 17.84 |
| EES03887 | Sorghum | cytosol | 45.16 | 17.72 |
| TraesCS1B01G289700.1 | Wheat | cytosol | 46.77 | 17.47 |
| TraesCS1D01G279800.1 | Wheat | cytosol, golgi, unclear | 46.77 | 17.47 |
| Os01t0849600-01 | Rice | cytosol, plastid | 45.16 | 17.28 |
| GSMUA_Achr9P03740_001 | Banana | cytosol | 41.94 | 15.76 |
| Zm00001d012382_P002 | Maize | cytosol | 45.16 | 14.66 |
| Os05t0453700-01 | Rice | cytosol | 43.55 | 14.29 |
| PGSC0003DMT400056226 | Potato | cytosol, extracellular | 37.1 | 14.11 |
| HORVU3Hr1G085660.9 | Barley | cytosol | 41.94 | 13.47 |
| Zm00001d038351_P004 | Maize | cytosol | 43.55 | 11.3 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400030609 | EnsemblPlantsGene:PGSC0003DMG400011722 | Gene3D:3.40.50.620 | GO:GO:0006950 | GO:GO:0008150 | InterPro:IPR014729 |
| InterPro:Rossmann-like_a/b/a_fold | InterPro:UspA | PANTHER:PTHR31964 | PANTHER:PTHR31964:SF23 | PFAM:PF00582 | PGSC:PGSC0003DMG400011722 |
| SUPFAM:SSF52402 | UniParc:UPI0002954E06 | UniProt:M1AUI0 | MapMan:35.2 | : | : |
Description
Universal stress protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400011722]
Coordinates
chr9:+:941815..943263
Molecular Weight (calculated)
7074.4 Da
IEP (calculated)
10.065
GRAVY (calculated)
-0.519
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MAEDKRIGIA MDFSKSSKAA LKWTINNLAD KGDTFCIIHV KNYDSRHQLW AQSGSRKNYT IV
001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVFIRI
101: NNTFLFKDSL AKTITNGGFV EIKRCM
101: NNTFLFKDSL AKTITNGGFV EIKRCM
Arabidopsis Description
AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.