Factsheet for PGSC0003DMT400056226

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g059930.2.1	Tomato	cytosol, extracellular	98.77	98.77
VIT_05s0077g01070.t01	Wine grape	cytosol	73.01	72.12
Bra022190.1-P	Field mustard	cytosol	68.1	68.1
CDX92110	Canola	cytosol	68.1	68.1
CDX75899	Canola	cytosol	66.87	66.87
Bra001649.1-P	Field mustard	cytosol	66.26	66.26
CDY52729	Canola	cytosol	66.26	66.26
CDY34988	Canola	cytosol	66.26	66.26
CDX82383	Canola	cytosol	66.26	66.26
Bra021214.1-P	Field mustard	cytosol	66.26	66.26
AT3G17020.1	Thale cress	cytosol	63.8	63.8
Bra038472.1-P	Field mustard	cytosol	29.45	63.16
KRH11952	Soybean	cytosol	63.19	62.8
CDY69106	Canola	cytosol	28.22	60.53
GSMUA_Achr11P...	Banana	cytosol	59.51	59.88
CDY67360	Canola	cytosol	24.54	59.7
CDY44517	Canola	cytosol	23.93	58.21
CDX95890	Canola	cytosol	66.87	55.9
Os05t0157200-01	Rice	cytosol, nucleus, plasma membrane, plastid	57.06	55.69
EES19072	Sorghum	cytosol	56.44	55.09
Zm00001d037573_P001	Maize	cytosol	55.83	54.49
TraesCS1A01G106600.1	Wheat	peroxisome	55.21	54.22
TraesCS1D01G108300.1	Wheat	peroxisome	55.21	54.22
KRH36979	Soybean	endoplasmic reticulum, extracellular, vacuole	43.56	48.97
GSMUA_Achr8P06380_001	Banana	cytosol	19.02	47.69
PGSC0003DMT400060724	Potato	cytosol	46.01	46.3
PGSC0003DMT400030606	Potato	cytosol	42.33	41.82
TraesCS1B01G124100.1	Wheat	cytosol	49.69	41.12
HORVU1Hr1G023260.1	Barley	plastid	55.21	40.91
PGSC0003DMT400049227	Potato	cytosol	41.1	40.36
Zm00001d011125_P001	Maize	extracellular	56.44	37.4
PGSC0003DMT400030609	Potato	cytosol	14.11	37.1

Protein Annotations

EntrezGene:102605897	Gene3D:3.40.50.620	MapMan:35.2	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006950	GO:GO:0008150	GO:GO:0009409	GO:GO:0009628	GO:GO:0016020	InterPro:IPR014729
UniProt:M1BZ56	PFAM:PF00582	EnsemblPlantsGene:PGSC0003DMG400021844	PGSC:PGSC0003DMG400021844	EnsemblPlants:PGSC0003DMT400056226	PRINTS:PR01438
PANTHER:PTHR31964	PANTHER:PTHR31964:SF65	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	UniParc:UPI000296F1CC	InterPro:Universal_stress_UspA
InterPro:UspA	RefSeq:XP_006358203.1	:	:	:	:

Description

Universal stress protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021844]

Coordinates

chr1:-:45210971..45213554

Molecular Weight (calculated)

17890.9 Da

IEP (calculated)

6.758

GRAVY (calculated)

-0.043

Length

163 amino acids

Sequence
(BLAST)

001: MEGGGRFVGV AVDFSACSNK ALKWAIDNIL RKGDHLILVT VRPEGHYEEG EMQLWEATGS PLIPLSEICD GHTMKRYGVN PDPETLQMIT LAARQMEITV
101: VMKIFWGDAR EKLCEAIDKT PLSCLVIGNR GLGKIKRAIM GSVSNYVVNN ATCPVTVVKK AED

Best Arabidopsis Sequence Match ( AT3G17020.1 )
(BLAST)

001: MAESGGRRIG VAVDFSDCSK KALSWAIDNV VRDGDHLILI TIAHDMNYEE GEMQLWETVG SPFIPMSEFS DAAVMKKYAL KPDAETLDIV NTAARKKTIT
101: VVMKIYWGDP REKICAAAEQ IPLSSLVMGN RGLGGLKRMI MGSVSNHVVN NVACPVTVVK AHI

Arabidopsis Description

AT3g17020/K14A17_14 [Source:UniProtKB/TrEMBL;Acc:Q9LSP5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.