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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:
  • cytosol 4
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 19621931
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G108300.1 Wheat peroxisome 82.04 82.53
TraesCS1A01G106600.1 Wheat peroxisome 81.44 81.93
Zm00001d037573_P001 Maize cytosol 78.44 78.44
EES19072 Sorghum cytosol 78.44 78.44
GSMUA_Achr11P... Banana cytosol 63.47 65.43
HORVU1Hr1G023260.1 Barley plastid 82.04 62.27
VIT_05s0077g01070.t01 Wine grape cytosol 61.08 61.82
TraesCS1B01G124100.1 Wheat cytosol 70.06 59.39
CDY34988 Canola cytosol 56.29 57.67
CDY52729 Canola cytosol 56.29 57.67
Solyc01g059930.2.1 Tomato cytosol, extracellular 56.29 57.67
Bra021214.1-P Field mustard cytosol 56.29 57.67
CDX92110 Canola cytosol 55.69 57.06
CDX75899 Canola cytosol 55.69 57.06
Bra022190.1-P Field mustard cytosol 55.69 57.06
PGSC0003DMT400056226 Potato cytosol, extracellular 55.69 57.06
Bra038472.1-P Field mustard cytosol 25.75 56.58
Bra001649.1-P Field mustard cytosol 55.09 56.44
CDX82383 Canola cytosol 55.09 56.44
CDY69106 Canola cytosol 25.15 55.26
AT3G17020.1 Thale cress cytosol 52.69 53.99
CDY67360 Canola cytosol 21.56 53.73
CDY44517 Canola cytosol 20.96 52.24
Zm00001d011125_P001 Maize extracellular 76.65 52.03
Os01t0849600-01 Rice cytosol, plastid 49.1 50.62
KRH11952 Soybean cytosol 49.7 50.61
GSMUA_Achr8P06380_001 Banana cytosol 18.56 47.69
Os02t0773200-01 Rice cytosol 46.71 47.27
CDX95890 Canola cytosol 55.09 47.18
Os05t0453700-01 Rice cytosol 46.11 40.74
Os05t0170200-02 Rice extracellular 48.5 39.9
KRH36979 Soybean endoplasmic reticulum, extracellular, vacuole 34.13 39.31
Os01t0170600-01 Rice extracellular 17.37 10.66
Protein Annotations
Gene3D:3.40.50.620MapMan:35.2EntrezGene:4337867ProteinID:AAS55767.1EMBL:AK065771ProteinID:BAF16618.1
ProteinID:BAS92372.1ProteinID:EEE62397.1GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006950
GO:GO:0008150GO:GO:0009409GO:GO:0009628GO:GO:0016020InterPro:IPR014729EnsemblPlantsGene:Os05g0157200
EnsemblPlants:Os05t0157200-01PFAM:PF00582PRINTS:PR01438PANTHER:PTHR31964PANTHER:PTHR31964:SF65UniProt:Q75M01
InterPro:Rossmann-like_a/b/a_foldSUPFAM:SSF52402UniParc:UPI0000253D7DInterPro:Universal_stress_UspAInterPro:UspARefSeq:XP_015639921.1
SEG:seg:::::
Description
UspA domain containing protein. (Os05t0157200-01)
Coordinates
chr5:-:3345130..3347246
Molecular Weight (calculated)
18004.7 Da
IEP (calculated)
5.003
GRAVY (calculated)
0.044
Length
167 amino acids
Sequence
(BLAST)
001: MAGEAAAAER WVGAAVDFSE GSRAALRWAA DNLLRAGDHL ILLHVLKDPD YEQGETLLWE ATGSPLIPLS DFSEPTIAKK YGAKPDAETL DMLNTVARQK
101: EVVVVFKVLW GDPREKLCQA INEIPMSCLV IGSRGLGKLK RVLLGSVSDY VVNNATCPVT VVKTADG
Best Arabidopsis Sequence Match ( AT3G17020.1 )
(BLAST)
001: MAESGGRRIG VAVDFSDCSK KALSWAIDNV VRDGDHLILI TIAHDMNYEE GEMQLWETVG SPFIPMSEFS DAAVMKKYAL KPDAETLDIV NTAARKKTIT
101: VVMKIYWGDP REKICAAAEQ IPLSSLVMGN RGLGGLKRMI MGSVSNHVVN NVACPVTVVK AHI
Arabidopsis Description
AT3g17020/K14A17_14 [Source:UniProtKB/TrEMBL;Acc:Q9LSP5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.