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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92110 Canola cytosol 81.03 96.93
CDY52729 Canola cytosol 77.44 92.64
CDY34988 Canola cytosol 76.92 92.02
CDX75899 Canola cytosol 75.38 90.18
CDX82383 Canola cytosol 75.38 90.18
CDY69106 Canola cytosol 33.33 85.53
AT3G17020.1 Thale cress cytosol 71.28 85.28
CDY67360 Canola cytosol 29.23 85.07
CDY44517 Canola cytosol 28.72 83.58
VIT_05s0077g01070.t01 Wine grape cytosol 58.46 69.09
Solyc01g059930.2.1 Tomato cytosol, extracellular 55.9 66.87
PGSC0003DMT400056226 Potato cytosol, extracellular 55.9 66.87
KRH11952 Soybean cytosol 53.85 64.02
GSMUA_Achr11P... Banana cytosol 51.28 61.73
TraesCS1D01G108300.1 Wheat peroxisome 49.23 57.83
TraesCS1A01G106600.1 Wheat peroxisome 48.72 57.23
Os05t0157200-01 Rice cytosol, nucleus, plasma membrane, plastid 47.18 55.09
Zm00001d037573_P001 Maize cytosol 45.64 53.29
EES19072 Sorghum cytosol 45.64 53.29
KRH36979 Soybean endoplasmic reticulum, extracellular, vacuole 36.92 49.66
CDY50688 Canola cytosol 37.44 45.91
CDY43136 Canola cytosol 36.92 45.28
CDX73512 Canola cytosol 36.41 45.22
HORVU1Hr1G023260.1 Barley plastid 49.74 44.09
TraesCS1B01G124100.1 Wheat cytosol 43.59 43.15
GSMUA_Achr8P06380_001 Banana cytosol 14.36 43.08
CDX67580 Canola cytosol 34.87 42.77
CDY07565 Canola cytosol 34.36 42.14
CDY13163 Canola cytosol 34.36 41.36
CDX76180 Canola cytosol 34.36 41.36
Zm00001d011125_P001 Maize extracellular 46.67 36.99
CDY54033 Canola cytosol 17.95 36.08
CDY54032 Canola plastid 5.64 32.35
Protein Annotations
EnsemblPlants:CDX95890EnsemblPlantsGene:GSBRNA2T00101880001Gene3D:3.40.50.620GO:A0A078E260GO:GO:0006950GO:GO:0008150
InterPro:IPR014729InterPro:Rossmann-like_a/b/a_foldInterPro:Universal_stress_UspAInterPro:UspAPANTHER:PTHR31964PANTHER:PTHR31964:SF65
PFAM:PF00582PRINTS:PR01438ProteinID:CDX95890ProteinID:CDX95890.1SEG:segSUPFAM:SSF52402
UniParc:UPI0004EF482BMapMan:35.2::::
Description
BnaC05g36410D
Coordinates
chrLK031891:+:1107774..1109774
Molecular Weight (calculated)
21671.5 Da
IEP (calculated)
9.163
GRAVY (calculated)
-0.191
Length
195 amino acids
Sequence
(BLAST)
001: MITKKEQNLT RERIKLSLKK VVLVRRERER ERMADSGGRR IGVAVDFSEC SKKALNWAID NVVRDGDYLI LITVAPNMNY EEGEMQLWET VGSPLIPLSE
101: VSEASVMKKY GVKPDAETLD IANTAATQKS ITVVMKIYWG DPREKLCEAA EHIPLSSIVI GNRGLGGLKR MIMGSVSNHV VNNVACPVTV VKAHH
Best Arabidopsis Sequence Match ( AT3G03270.2 )
(BLAST)
001: MGKARTVGVG MDYSPTSKLA LRWAAENLLE DGDTVILIHV QPQNADHTRK ILFEETGSPL IPLEEFREVN LSKQYGLAYD PEVLDVLDTL SRAKKVKVVA
101: KVYWGDPREK LCDAVENLKL DSIVLGSRGL GSLKRILLGS VSNHVVTNAT CPVTVVKAN
Arabidopsis Description
AT3G03270 protein [Source:UniProtKB/TrEMBL;Acc:Q8LFK2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.