CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030609	Potato	cytosol	34.02	53.23
CDX73512	Canola	cytosol	55.67	34.39
CDX67580	Canola	cytosol	51.55	31.45
CDX76180	Canola	cytosol	51.55	30.86
CDY13163	Canola	cytosol	51.55	30.86
CDY07565	Canola	cytosol	50.52	30.82
Solyc09g011660.2.1	Tomato	cytosol	47.42	28.05
PGSC0003DMT400030606	Potato	cytosol	47.42	27.88
Solyc09g011670.2.1	Tomato	cytosol, nucleus	46.39	27.44
GSMUA_AchrUn_...	Banana	cytosol	37.11	27.27
GSMUA_Achr6P23610_001	Banana	cytosol	40.21	24.38
EES03887	Sorghum	cytosol	38.14	23.42
EES18332	Sorghum	cytosol	39.18	22.89
PGSC0003DMT400049227	Potato	cytosol	39.18	22.89
Solyc10g086670.1.1	Tomato	cytosol	38.14	22.29
CDX92110	Canola	cytosol	37.11	22.09
Os01t0849600-01	Rice	cytosol, plastid	36.08	21.6
CDX75899	Canola	cytosol	36.08	21.47
CDY34988	Canola	cytosol	36.08	21.47
CDX82383	Canola	cytosol	36.08	21.47
CDY50688	Canola	cytosol	35.05	21.38
CDY43136	Canola	cytosol	35.05	21.38
TraesCS1A01G280700.1	Wheat	cytosol	36.08	21.08
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	36.08	21.08
TraesCS1B01G289700.1	Wheat	cytosol	36.08	21.08
CDY52729	Canola	cytosol	35.05	20.86
GSMUA_Achr9P03740_001	Banana	cytosol	35.05	20.61
GSMUA_Achr3P17670_001	Banana	mitochondrion	38.14	20.0
Zm00001d012382_P002	Maize	cytosol	39.18	19.9
HORVU3Hr1G085660.9	Barley	cytosol	39.18	19.69
Os05t0453700-01	Rice	cytosol	38.14	19.58
CDX95890	Canola	cytosol	36.08	17.95
Zm00001d038351_P004	Maize	cytosol	37.11	15.06
CDY69106	Canola	cytosol	7.22	9.21
CDY44517	Canola	cytosol	5.15	7.46
CDY67360	Canola	cytosol	5.15	7.46
CDY54032	Canola	plastid	2.06	5.88

Protein Annotations

EnsemblPlants:CDY54033	EnsemblPlantsGene:GSBRNA2T00012011001	Gene3D:3.40.50.620	GO:A0A078IYE5	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23	PFAM:PF00582
ProteinID:CDY54033	ProteinID:CDY54033.1	SUPFAM:SSF52402	UniParc:UPI0004EEF45A	UniProt:A0A078IYE5	MapMan:35.2

Description

BnaA09g54970DBnaA09g54970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYE5]

Coordinates

chrLK033267:-:55577..56161

Molecular Weight (calculated)

11100.4 Da

IEP (calculated)

10.458

GRAVY (calculated)

-0.303

Length

97 amino acids

Sequence
(BLAST)

1: MPKDRKIGIA MDFSESSKNA LRWAIDNLAD KGDTFYIIHA LPTSEAGHVT PSGSNPVLLS YHWWSLGNQR LWRNTVSKSI YQFLICSTLV RGRKRFM

Best Arabidopsis Sequence Match ( AT3G53990.2 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVFIRI
101: NNTFLFKDSL AKTITNGGFV EIKRCM

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.