CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67580
CDX73512
CDX76180
CDY07565
CDY13163
CDY54032

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	CDX67580	AT3G53990.1	21798944
AT3G53990.1	CDX73512	AT3G53990.1	21798944
AT3G53990.1	CDX76180	AT3G53990.1	21798944
AT3G53990.1	CDY07565	AT3G53990.1	21798944
AT3G53990.1	CDY13163	AT3G53990.1	21798944
AT3G53990.1	CDY54032	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73512	Canola	cytosol	100.0	21.66
Bra007038.1-P	Field mustard	cytosol	100.0	21.52
AT3G53990.1	Thale cress	cytosol	100.0	21.25
CDX76180	Canola	cytosol	97.06	20.37
CDY13163	Canola	cytosol	97.06	20.37
CDX67580	Canola	cytosol	94.12	20.13
CDY07565	Canola	cytosol	94.12	20.13
KRH75751	Soybean	endoplasmic reticulum	73.53	15.24
KRH62427	Soybean	endoplasmic reticulum	73.53	14.97
KRH49226	Soybean	cytosol	67.65	14.65
KRH00077	Soybean	cytosol	67.65	14.65
EES03887	Sorghum	cytosol	61.76	13.29
Os01t0849600-01	Rice	cytosol, plastid	61.76	12.96
VIT_08s0007g01430.t01	Wine grape	cytosol	61.76	12.8
TraesCS1B01G289700.1	Wheat	cytosol	61.76	12.65
TraesCS1A01G280700.1	Wheat	cytosol	61.76	12.65
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	61.76	12.65
GSMUA_Achr6P23610_001	Banana	cytosol	58.82	12.5
GSMUA_Achr3P17670_001	Banana	mitochondrion	67.65	12.43
EES18332	Sorghum	cytosol	58.82	12.05
CDY50688	Canola	cytosol	55.88	11.95
CDY43136	Canola	cytosol	55.88	11.95
GSMUA_Achr9P03740_001	Banana	cytosol	55.88	11.52
Zm00001d012382_P002	Maize	cytosol	61.76	10.99
CDY67360	Canola	cytosol	20.59	10.45
CDY44517	Canola	cytosol	17.65	8.96
CDY69106	Canola	cytosol	17.65	7.89
CDY34988	Canola	cytosol	32.35	6.75
CDX92110	Canola	cytosol	32.35	6.75
CDX82383	Canola	cytosol	32.35	6.75
CDX75899	Canola	cytosol	32.35	6.75
CDY52729	Canola	cytosol	32.35	6.75
Os05t0453700-01	Rice	cytosol	35.29	6.35
HORVU3Hr1G085660.9	Barley	cytosol	35.29	6.22
GSMUA_AchrUn_...	Banana	cytosol	23.53	6.06
CDX95890	Canola	cytosol	32.35	5.64
Zm00001d038351_P004	Maize	cytosol	35.29	5.02
CDY54033	Canola	cytosol	5.88	2.06

Protein Annotations

EnsemblPlants:CDY54032	EnsemblPlantsGene:GSBRNA2T00012010001	Gene3D:3.40.50.620	GO:A0A078IVM7	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23	PFAM:PF00582
ProteinID:CDY54032	ProteinID:CDY54032.1	SUPFAM:SSF52402	UniParc:UPI0004EE56D7	UniProt:A0A078IVM7	MapMan:35.2

Description

BnaA09g54960DBnaA09g54960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVM7]

Coordinates

chrLK033267:-:54572..55499

Molecular Weight (calculated)

3585.5 Da

IEP (calculated)

9.829

GRAVY (calculated)

0.562

Length

34 amino acids

Sequence
(BLAST)

1: MGSRGLSALQ RIIMGSVSSF VIQHAPCPVT VVKD

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.