CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 2
plastid 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03887
EES18332

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	EES03887	AT3G53990.1	21798944
AT3G53990.1	EES18332	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	77.71	77.71
TraesCS1B01G289700.1	Wheat	cytosol	77.71	77.71
TraesCS1A01G280700.1	Wheat	cytosol	76.51	76.51
GSMUA_Achr6P23610_001	Banana	cytosol	62.65	65.0
EES03887	Sorghum	cytosol	60.84	63.92
KRH29731	Soybean	endoplasmic reticulum	62.05	62.8
KRH24723	Soybean	nucleus	61.45	62.2
VIT_08s0007g01430.t01	Wine grape	cytosol	60.84	61.59
AT3G53990.1	Thale cress	cytosol	59.04	61.25
PGSC0003DMT400030606	Potato	cytosol	60.84	61.21
Solyc09g011670.2.1	Tomato	cytosol, nucleus	60.24	60.98
CDX73512	Canola	cytosol	57.23	60.51
Solyc09g011660.2.1	Tomato	cytosol	59.64	60.37
Os05t0453700-01	Rice	cytosol	68.67	60.32
Bra007038.1-P	Field mustard	cytosol	56.63	59.49
KRH75751	Soybean	endoplasmic reticulum	58.43	59.15
CDY54032	Canola	plastid	12.05	58.82
KRH49226	Soybean	cytosol	55.42	58.6
KRH00077	Soybean	cytosol	55.42	58.6
Bra003163.1-P	Field mustard	cytosol	56.02	58.49
CDX67580	Canola	cytosol	56.02	58.49
CDY07565	Canola	cytosol	56.02	58.49
KRH62427	Soybean	endoplasmic reticulum	57.23	56.89
Bra014852.1-P	Field mustard	cytosol	55.42	56.79
CDX76180	Canola	cytosol	55.42	56.79
CDY13163	Canola	cytosol	55.42	56.79
Zm00001d038351_P004	Maize	cytosol	81.33	56.49
VIT_06s0004g05730.t01	Wine grape	cytosol	54.22	54.88
GSMUA_Achr3P17670_001	Banana	mitochondrion	60.24	54.05
Solyc10g086670.1.1	Tomato	cytosol	53.61	53.61
PGSC0003DMT400049227	Potato	cytosol	51.81	51.81
EES05878	Sorghum	cytosol	50.0	50.3
PGSC0003DMT400030609	Potato	cytosol	18.67	50.0
EES19072	Sorghum	cytosol	49.4	49.1
CDY54033	Canola	cytosol	22.89	39.18
EES02389	Sorghum	cytosol, plastid	36.75	38.61
KXG21431	Sorghum	cytosol, mitochondrion, plastid	39.16	35.52
KXG31754	Sorghum	mitochondrion, plastid	16.87	10.94

Protein Annotations

EnsemblPlants:EES18332	EnsemblPlantsGene:SORBI_3009G159400	EntrezGene:8061754	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF23
PFAM:PF00582	PRINTS:PR01438	ProteinID:EES18332	ProteinID:EES18332.1	RefSeq:XP_002439902.1	SEG:seg
SUPFAM:SSF52402	unigene:Sbi.335	UniParc:UPI0001A888E3	UniProt:C5YZ64	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr9:+:51705709..51708737

Molecular Weight (calculated)

17918.6 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.039

Length

166 amino acids

Sequence
(BLAST)

001: MAAAAAAADG ERRIGVAMDY SESAKKALDW AIDNLLHHGD TLVVLHVLHH SGEETKHALW AKSGSPLIPL SEFREPEVMQ GYGVRTDAEV LDMIDTAARQ
101: KQLKVVAKLY WGDAREKLCD AVGDLKIDSL VMGSRGLGPI QRILLGSVTN YVLSNASCPV TVVKGK

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.