Factsheet for Bra003163.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003163.1-P
Bra007038.1-P
Bra014852.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53990.1	Bra003163.1-P	AT3G53990.1	21798944
AT3G53990.1	Bra007038.1-P	AT3G53990.1	21798944
AT3G53990.1	Bra014852.1-P	AT3G53990.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67580	Canola	cytosol	100.0	100.0
CDY07565	Canola	cytosol	98.74	98.74
AT3G53990.1	Thale cress	cytosol	90.57	90.0
Bra014852.1-P	Field mustard	cytosol	88.68	87.04
Bra007038.1-P	Field mustard	cytosol	86.16	86.71
KRH75751	Soybean	endoplasmic reticulum	72.96	70.73
KRH62427	Soybean	endoplasmic reticulum	72.33	68.86
Solyc09g011670.2.1	Tomato	cytosol, nucleus	69.81	67.68
KRH49226	Soybean	cytosol	66.04	66.88
VIT_08s0007g01430.t01	Wine grape	cytosol	68.55	66.46
PGSC0003DMT400030606	Potato	cytosol	68.55	66.06
KRH00077	Soybean	cytosol	64.15	64.97
Solyc09g011660.2.1	Tomato	cytosol	65.41	63.41
PGSC0003DMT400030609	Potato	cytosol	24.53	62.9
GSMUA_AchrUn_...	Banana	cytosol	49.69	59.85
EES18332	Sorghum	cytosol	58.49	56.02
Bra032002.1-P	Field mustard	cytosol	54.72	54.72
GSMUA_Achr6P23610_001	Banana	cytosol	54.09	53.75
TraesCS1B01G289700.1	Wheat	cytosol	55.97	53.61
TraesCS1D01G279800.1	Wheat	cytosol, golgi, unclear	55.97	53.61
PGSC0003DMT400049227	Potato	cytosol	54.72	52.41
Solyc10g086670.1.1	Tomato	cytosol	54.72	52.41
TraesCS1A01G280700.1	Wheat	cytosol	54.72	52.41
EES03887	Sorghum	cytosol	50.94	51.27
GSMUA_Achr3P17670_001	Banana	mitochondrion	59.12	50.81
Os01t0849600-01	Rice	cytosol, plastid	50.94	50.0
GSMUA_Achr9P03740_001	Banana	cytosol	49.06	47.27
Os05t0453700-01	Rice	cytosol	52.2	43.92
Zm00001d012382_P002	Maize	cytosol	51.57	42.93
Bra001649.1-P	Field mustard	cytosol	42.77	41.72
Bra022190.1-P	Field mustard	cytosol	42.77	41.72
Bra021214.1-P	Field mustard	cytosol	42.14	41.1
HORVU3Hr1G085660.9	Barley	cytosol	49.06	40.41
Bra038472.1-P	Field mustard	cytosol	17.61	36.84
Zm00001d038351_P004	Maize	cytosol	50.31	33.47

Protein Annotations

Gene3D:3.40.50.620	MapMan:35.2	EnsemblPlantsGene:Bra003163	EnsemblPlants:Bra003163.1	EnsemblPlants:Bra003163.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005886	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0009408
GO:GO:0009409	GO:GO:0009506	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0034337
GO:GO:0061077	InterPro:IPR014729	UniProt:M4CG30	PFAM:PF00582	PRINTS:PR01438	PANTHER:PTHR31964
PANTHER:PTHR31964:SF23	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	UniParc:UPI0000EC7D81	InterPro:Universal_stress_UspA	InterPro:UspA

Description

AT3G53990 (E=9e-080) | universal stress protein (USP) family protein

Coordinates

chrA07:-:11636972..11638208

Molecular Weight (calculated)

17658.5 Da

IEP (calculated)

6.269

GRAVY (calculated)

-0.111

Length

159 amino acids

Sequence
(BLAST)

001: MPKDRKIGIA MDFSESSKNA LKWAIENLAD KGDTLYIIHT LPTSEAESRN ALWLESGSPL IPLAEFREPK IMENYGVKID IACLDMLDTG SRKKEVHVVT
101: KLYWGDAREK LVDAVKELKL DSIVMGSRGL SALQRIIMGS VSSFVIDHAP CPVTIVKDN

Best Arabidopsis Sequence Match ( AT3G53990.1 )
(BLAST)

001: MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
101: KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP CPVTVVKDNE

Arabidopsis Description

AT3G53990 protein [Source:UniProtKB/TrEMBL;Acc:Q9M328]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.