CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59573	Soybean	endoplasmic reticulum	93.78	93.78
KRH64034	Soybean	cytosol	86.6	87.44
KRH53905	Soybean	cytosol	83.73	84.54
CDY14967	Canola	cytosol	85.17	83.96
Bra036934.1-P	Field mustard	cytosol	84.21	83.02
AT1G43890.1	Thale cress	cytosol	84.21	83.02
Bra032196.1-P	Field mustard	cytosol	84.21	82.63
CDY43856	Canola	cytosol	84.21	82.63
CDY35803	Canola	cytosol	83.73	82.55
KRH15908	Soybean	mitochondrion	84.21	82.24
Bra034924.1-P	Field mustard	cytosol	83.25	82.08
CDY47787	Canola	cytosol	83.25	82.08
KRH18093	Soybean	endoplasmic reticulum	84.21	81.86
CDY69246	Canola	cytosol	59.33	79.49
CDY51571	Canola	cytosol	33.01	76.67
VIT_18s0001g15090.t01	Wine grape	plastid	84.21	74.26
KRH32565	Soybean	extracellular	67.46	66.51
KRH19962	Soybean	cytosol	66.99	66.35
KRH67770	Soybean	endoplasmic reticulum	65.07	64.45
KRG96048	Soybean	cytosol	64.59	63.98
KRH34658	Soybean	cytosol	56.94	56.13
KRG92126	Soybean	endoplasmic reticulum	56.94	56.13
KRH55263	Soybean	cytosol	33.49	48.61

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	UniProt:A0A0R4J3X0	EMBL:ACUP02004867	EnsemblPlantsGene:GLYMA_08G157000	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
EnsemblPlants:KRH43557	ProteinID:KRH43557	ProteinID:KRH43557.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI00019AA8EB	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:12139116..12142461

Molecular Weight (calculated)

23373.0 Da

IEP (calculated)

6.018

GRAVY (calculated)

-0.234

Length

209 amino acids

Sequence
(BLAST)

001: MDSSSGHQEF DYLFKLLMIG DSGVGKSSLL LSFTSDAFED LSPTIGVDFK VKYVMMGGKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSEIWAKE IDLYSTNQDC IKMLVGNKLD KDGDRVVTKK EGIDFAREYG CLFIECSAKT RVNVQQCFEE LVLKILDTPS LIAEGSKGVK KNIFKDRPPQ
201: SDASASSCC

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.