CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18093	Soybean	endoplasmic reticulum	94.39	93.95
Solyc04g064510.2.1	Tomato	cytosol	87.38	89.47
PGSC0003DMT400063864	Potato	cytosol	85.05	87.08
KRH43557	Soybean	cytosol	82.24	84.21
KRH59573	Soybean	endoplasmic reticulum	82.24	84.21
KRH53905	Soybean	cytosol	79.44	82.13
KRH64034	Soybean	cytosol	78.97	81.64
KRH19962	Soybean	cytosol	66.82	67.77
KRH32565	Soybean	extracellular	66.82	67.45
KRH67770	Soybean	endoplasmic reticulum	65.89	66.82
KRG96048	Soybean	cytosol	65.42	66.35
KRG92126	Soybean	endoplasmic reticulum	58.88	59.43
KRH34658	Soybean	cytosol	57.94	58.49
KRH55263	Soybean	cytosol	30.84	45.83

Protein Annotations

EntrezGene:100794330	MapMan:22.8.1.3	Gene3D:3.40.50.300	EMBL:ACUP02008717	EMBL:BT097761	UniProt:C6TJB7
EnsemblPlantsGene:GLYMA_14G118400	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0016787	EnsemblPlants:KRH15908	ProteinID:KRH15908	ProteinID:KRH15908.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI0001B165CD	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:15897129..15906701

Molecular Weight (calculated)

23799.3 Da

IEP (calculated)

5.439

GRAVY (calculated)

-0.234

Length

214 amino acids

Sequence
(BLAST)

001: MDASSSSSSQ PEFDYLFKLL LIGDSGVGKS TLLLSFTSDT FEDLSPTIGV DFKVKYVTIG GKKLKLAIWD TAGQERFRTL TSSYYRGAQG IIMVYDVTRR
101: ETFTNLSDIW AKEIDLYSTN QDCIKMLVGN KVDKESERVV SKKEGIDFAR EYGCLYTECS AKTRVNVTQC FDELVMKILE TPSLLAEGSS GVKKNIFKQK
201: PPLSDASSSG CCSW

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.