CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15908	Soybean	mitochondrion	93.95	94.39
PGSC0003DMT400063864	Potato	cytosol	84.19	86.6
Solyc04g064510.2.1	Tomato	cytosol	84.19	86.6
KRH43557	Soybean	cytosol	81.86	84.21
KRH59573	Soybean	endoplasmic reticulum	81.86	84.21
KRH64034	Soybean	cytosol	79.53	82.61
KRH53905	Soybean	cytosol	79.07	82.13
KRH19962	Soybean	cytosol	67.44	68.72
KRH32565	Soybean	extracellular	67.44	68.4
KRH67770	Soybean	endoplasmic reticulum	66.05	67.3
KRG96048	Soybean	cytosol	65.58	66.82
KRG92126	Soybean	endoplasmic reticulum	58.6	59.43
KRH34658	Soybean	cytosol	57.67	58.49
KRH55263	Soybean	cytosol	30.7	45.83

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	EMBL:ACUP02008028	EnsemblPlantsGene:GLYMA_13G036800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0016787	UniProt:I1LXB2	EnsemblPlants:KRH18093
ProteinID:KRH18093	ProteinID:KRH18093.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001BA89C2

Description

hypothetical protein

Coordinates

chr13:-:11490072..11497385

Molecular Weight (calculated)

23903.4 Da

IEP (calculated)

5.439

GRAVY (calculated)

-0.271

Length

215 amino acids

Sequence
(BLAST)

001: MDASSSSSST QPEFDYLFKL LLIGDSGVGK STLLLSFTSD TFEDLSPTIG VDFKVKYVTM GGKKLKLAIW DTAGQERFRT LTSSYYRGAQ GIIMVYDVTR
101: RETFTNLSDI WAKEIDLYST NQDCIKMLVG NKVDKESERV VSKKEGIDFA REYGCLYTEC SAKTRVNVAQ CFDELVMKIL ETPSLLAEGS SGVKKNIFKQ
201: KPPQSDASSS GCCSW

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.