Factsheet for PGSC0003DMT400063864

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g064510.2.1	Tomato	cytosol	94.26	94.26
GSMUA_Achr7P03080_001	Banana	cytosol	86.6	86.19
EES13169	Sorghum	cytosol	88.04	85.58
KRH15908	Soybean	mitochondrion	87.08	85.05
GSMUA_Achr10P...	Banana	cytosol	84.69	84.29
KRH18093	Soybean	endoplasmic reticulum	86.6	84.19
TraesCS2B01G617000.1	Wheat	cytosol	86.6	83.41
TraesCS2D01G567100.1	Wheat	cytosol	86.6	83.41
TraesCS3A01G421700.1	Wheat	cytosol, golgi	83.73	82.16
HORVU2Hr1G127540.1	Barley	cytosol	84.21	81.48
HORVU2Hr1G127520.1	Barley	cytosol	84.21	81.48
TraesCSU01G137100.1	Wheat	cytosol, plastid	84.69	80.82
PGSC0003DMT400049302	Potato	cytosol	68.42	66.51
PGSC0003DMT400009952	Potato	cytosol	67.94	65.74
HORVU1Hr1G025450.1	Barley	endoplasmic reticulum	41.63	61.27
PGSC0003DMT400079770	Potato	cytosol	59.33	57.41
GSMUA_Achr5P15600_001	Banana	cytosol	38.76	52.6

Protein Annotations

EntrezGene:102603544	MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1CBE1	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400024823	PGSC:PGSC0003DMG400024823	EnsemblPlants:PGSC0003DMT400063864	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000294E925	RefSeq:XP_006356316.1

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400024823]

Coordinates

chr4:-:57939740..57945690

Molecular Weight (calculated)

23283.8 Da

IEP (calculated)

5.164

GRAVY (calculated)

-0.212

Length

209 amino acids

Sequence
(BLAST)

001: MEPSSSSPEF DYLFKLLLIG DSGVGKSSLL LSFTSDAFED LSPTIGVDFK VKHVTLGGKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQEC IKMLVGNKVD KESERVVSKK EGIEFAREYG CLFIECSAKT RVNVEQCFEE LVLKILDTPS LLAEGSAGVR KNIFRQKPPE
201: SDASTSGCC

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.