CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G567100.1	Wheat	cytosol	93.95	93.09
TraesCS2B01G617000.1	Wheat	cytosol	93.95	93.09
TraesCS3A01G421700.1	Wheat	cytosol, golgi	89.3	90.14
HORVU2Hr1G127540.1	Barley	cytosol	90.23	89.81
HORVU2Hr1G127520.1	Barley	cytosol	90.23	89.81
GSMUA_Achr7P03080_001	Banana	cytosol	86.98	89.05
TraesCSU01G137100.1	Wheat	cytosol, plastid	90.7	89.04
PGSC0003DMT400063864	Potato	cytosol	85.58	88.04
GSMUA_Achr10P...	Banana	cytosol	83.72	85.71
Solyc04g064510.2.1	Tomato	cytosol	82.33	84.69
AT1G43890.1	Thale cress	cytosol	82.33	83.49
CDY14967	Canola	cytosol	82.33	83.49
Bra036934.1-P	Field mustard	cytosol	81.86	83.02
CDY47787	Canola	cytosol	81.86	83.02
Bra032196.1-P	Field mustard	cytosol	81.86	82.63
CDY43856	Canola	cytosol	81.86	82.63
CDY35803	Canola	cytosol	81.4	82.55
Bra034924.1-P	Field mustard	cytosol	80.93	82.08
CDY69246	Canola	cytosol	58.6	80.77
CDY51571	Canola	cytosol	32.56	77.78
VIT_00s1603g00010.t01	Wine grape	cytosol	17.67	63.33
EER91530	Sorghum	cytosol	60.93	60.37
EER95509	Sorghum	cytosol	57.67	59.05
VIT_13s0019g05280.t01	Wine grape	cytosol	37.21	48.48
KRH55263	Soybean	cytosol	30.23	45.14
VIT_15s0024g00940.t01	Wine grape	cytosol, endoplasmic reticulum	21.4	32.17
VIT_13s0047g01030.t01	Wine grape	mitochondrion	18.14	30.0

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	EntrezGene:8076692	UniProt:C5YB63	EnsemblPlants:EES13169	ProteinID:EES13169
ProteinID:EES13169.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	EnsemblPlantsGene:SORBI_3006G281800	SUPFAM:SSF52540	unigene:Sbi.16183	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A87682	RefSeq:XP_002448841.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:61166870..61170512

Molecular Weight (calculated)

23829.5 Da

IEP (calculated)

5.161

GRAVY (calculated)

-0.200

Length

215 amino acids

Sequence
(BLAST)

001: MDSSSSSSSL SQQPEFDYLF KLLLIGDSGV GKSSLLLRFT ADSFEDLSPT IGVDFKVKMV SIGGKKLKLA IWDTAGQERF RTLTSSYYRG AQGIIMVYDV
101: TRRETFTNLS DIWAKEIDLY STNQDCIKML VGNKVDKESE RCVTKKEGIE FAREYGCLFL ECSAKTKVNV EQCFEELVLK ILDTPSLLAD ASSGAKKNIF
201: KQKPPEADAA ASSCC

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.