Factsheet for VIT_13s0047g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1603g00010.t01	Wine grape	cytosol	18.46	40.0
VIT_13s0019g05280.t01	Wine grape	cytosol	29.23	23.03
HORVU1Hr1G025450.1	Barley	endoplasmic reticulum	21.54	19.72
VIT_08s0007g04740.t01	Wine grape	cytosol	31.54	19.43
VIT_15s0024g00940.t01	Wine grape	cytosol, endoplasmic reticulum	20.0	18.18
EES13169	Sorghum	cytosol	30.0	18.14
TraesCS3A01G421700.1	Wheat	cytosol, golgi	28.46	17.37
TraesCS2B01G617000.1	Wheat	cytosol	28.46	17.05
TraesCS2D01G567100.1	Wheat	cytosol	28.46	17.05
VIT_13s0019g05190.t01	Wine grape	cytosol	27.69	16.98
TraesCSU01G137100.1	Wheat	cytosol, plastid	28.46	16.89
KRH55263	Soybean	cytosol	18.46	16.67
VIT_18s0001g15090.t01	Wine grape	plastid	28.46	15.61
GSMUA_Achr5P15600_001	Banana	cytosol	18.46	15.58

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI29096	ProteinID:CBI29096.3	UniProt:D7TF61	EMBL:FN595767
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	InterPro:Gdt1	InterPro:P-loop_NTPase	PFAM:PF00071	PANTHER:PTHR12608	PANTHER:PTHR12608:SF7
SUPFAM:SSF52540	InterPro:Small_GTPase	UniParc:UPI0001BE31D4	ArrayExpress:VIT_13s0047g01030	EnsemblPlantsGene:VIT_13s0047g01030	EnsemblPlants:VIT_13s0047g01030.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:+:17901702..17906550

Molecular Weight (calculated)

14481.7 Da

IEP (calculated)

10.038

GRAVY (calculated)

0.169

Length

130 amino acids

Sequence
(BLAST)

001: MLLTIGGKRL KLTNWDTAGH ERFGTLTNSY YRGAHGIILD AARIVLGAKS RPVLPIGEYA AVTLVMFFGL KSIKDAWDLP SNVGKSGPKL DEFVEAEEFV
101: KEKVSKRLSN PLEIVWKSFS LVFFAVSIFF

Best Arabidopsis Sequence Match ( AT4G13590.2 )
(BLAST)

001: MKLTSLSKNA NSTATAVTVS SIQKLPFLSL SETLPCPKSS RKPTFLPCKC RRRPKLDLLW GKFRVRASDA GVGSGSYSGG EEDGSQSSSL DQSPATSSES
101: LKPRGPFPYS LSIALVLLSC GLVFSLITFV KGGPSSVLAA VAKSGFTAAF SLIFVSEIGD KTFFIAALLA MQYEKTLVLL GSMGALSLMT ILSVVIGKIF
201: QSVPAQFQTT LPIGEYAAIA LLMFFGLKSI KDAWDLPPVE AKNGEETGIE LGEYSEAEEL VKEKASKKLT NPLEILWKSF SLVFFAEWGD RSMLATVALG
301: AAQSPLGVAS GAIAGHLVAT VLAIMGGAFL ANYISEKLVG YVGGALFLVF AAATFFGVF

Arabidopsis Description

PAM71-HLProtein PAM71-homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9T0H9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.