Factsheet for TraesCS3A01G421700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G137100.1	Wheat	cytosol, plastid	95.77	93.15
TraesCS2D01G567100.1	Wheat	cytosol	94.84	93.09
TraesCS2B01G617000.1	Wheat	cytosol	94.84	93.09
HORVU2Hr1G127540.1	Barley	cytosol	92.49	91.2
HORVU2Hr1G127520.1	Barley	cytosol	92.49	91.2
EES13169	Sorghum	cytosol	90.14	89.3
GSMUA_Achr10P...	Banana	cytosol	85.92	87.14
GSMUA_Achr7P03080_001	Banana	cytosol	84.98	86.19
Solyc04g064510.2.1	Tomato	cytosol	84.04	85.65
PGSC0003DMT400063864	Potato	cytosol	82.16	83.73
CDY14967	Canola	cytosol	82.16	82.55
AT1G43890.1	Thale cress	cytosol	81.69	82.08
CDY47787	Canola	cytosol	81.69	82.08
Bra032196.1-P	Field mustard	cytosol	81.69	81.69
CDY43856	Canola	cytosol	81.69	81.69
Bra036934.1-P	Field mustard	cytosol	81.22	81.6
CDY35803	Canola	cytosol	80.75	81.13
Bra034924.1-P	Field mustard	cytosol	80.28	80.66
CDY69246	Canola	cytosol	58.69	80.13
CDY51571	Canola	cytosol	33.33	78.89
VIT_00s1603g00010.t01	Wine grape	cytosol	16.9	60.0
TraesCS4A01G410700.1	Wheat	cytosol, extracellular	54.46	56.04
TraesCS1A01G143100.1	Wheat	cytosol	56.34	55.3
VIT_13s0019g05280.t01	Wine grape	cytosol	36.15	46.67
KRH55263	Soybean	cytosol	30.99	45.83
VIT_15s0024g00940.t01	Wine grape	cytosol, endoplasmic reticulum	21.13	31.47
VIT_13s0047g01030.t01	Wine grape	mitochondrion	17.37	28.46

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS3A01G421700	EnsemblPlants:TraesCS3A01G421700.1	TIGR:cd01863	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:+:663176120..663178289

Molecular Weight (calculated)

23491.0 Da

IEP (calculated)

5.451

GRAVY (calculated)

-0.193

Length

213 amino acids

Sequence
(BLAST)

001: STASSSQAQA QPDFDYLFKL LLIGDSGVGK SSLLLRFTSD SFEDLSPTIG VDFKVKMVNI AGKKLKLAVW DTAGQERFRT LTSSYYRGAQ GIIMVYDVTR
101: RETFTNLSDI WAKEIDLYST NQDCIKMLVG NKVDKESERA VTKKEGIDFA REYGCLFLEC SAKTKVNVEQ CFEELVLKIL DTPSLLADAS SGAKKNIFKQ
201: KAPEADAAAS GCC

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.