CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034924.1-P	Field mustard	cytosol	99.53	99.53
AT1G43890.1	Thale cress	cytosol	98.58	98.58
CDY14967	Canola	cytosol	98.11	98.11
CDY51571	Canola	cytosol	41.04	96.67
CDY43856	Canola	cytosol	96.7	96.24
CDY47787	Canola	cytosol	96.23	96.23
CDY69246	Canola	cytosol	66.98	91.03
GSMUA_Achr10P...	Banana	cytosol	85.38	86.19
KRH43557	Soybean	cytosol	82.55	83.73
GSMUA_Achr7P03080_001	Banana	cytosol	82.55	83.33
KRH59573	Soybean	endoplasmic reticulum	82.08	83.25
EES13169	Sorghum	cytosol	82.55	81.4
TraesCS3A01G421700.1	Wheat	cytosol, golgi	81.13	80.75
KRH64034	Soybean	cytosol	78.3	80.19
TraesCS2D01G567100.1	Wheat	cytosol	82.08	80.18
TraesCS2B01G617000.1	Wheat	cytosol	82.08	80.18
HORVU2Hr1G127520.1	Barley	cytosol	81.6	80.09
HORVU2Hr1G127540.1	Barley	cytosol	81.6	80.09
KRH53905	Soybean	cytosol	77.36	79.23
TraesCSU01G137100.1	Wheat	cytosol, plastid	81.6	79.0
VIT_18s0001g15090.t01	Wine grape	plastid	84.43	75.53
CDY04887	Canola	cytosol	72.64	72.64
CDY10375	Canola	cytosol	71.7	72.38
CDX70301	Canola	cytosol	71.23	71.9
CDY44372	Canola	cytosol	71.7	71.7
CDY41571	Canola	cytosol	66.04	68.63
CDY54608	Canola	cytosol	65.09	67.65
CDY11028	Canola	cytosol	27.36	65.91
HORVU1Hr1G025450.1	Barley	endoplasmic reticulum	39.15	58.45
GSMUA_Achr5P15600_001	Banana	cytosol	38.68	53.25

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:A0A078HG55	UniProt:A0A078HG55	EnsemblPlants:CDY35803	ProteinID:CDY35803
ProteinID:CDY35803.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00059303001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0004EF3342	SEG:seg	:	:	:	:

Description

BnaA08g04640DBnaA08g04640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HG55]

Coordinates

chrLK032361:-:342324..343942

Molecular Weight (calculated)

23575.0 Da

IEP (calculated)

6.553

GRAVY (calculated)

-0.303

Length

212 amino acids

Sequence
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: KNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTTEGSSGGK KNIFKQNPAQ
201: TSSTSSSYCC SS

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.