CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G43890.1	Thale cress	cytosol	91.67	67.45
CDY14967	Canola	cytosol	91.67	67.45
Bra032196.1-P	Field mustard	cytosol	91.67	67.14
CDY43856	Canola	cytosol	91.67	67.14
CDY35803	Canola	cytosol	91.03	66.98
CDY47787	Canola	cytosol	90.38	66.51
GSMUA_Achr10P...	Banana	cytosol	80.77	60.0
KRH59573	Soybean	endoplasmic reticulum	80.13	59.81
KRH43557	Soybean	cytosol	79.49	59.33
TraesCS3A01G421700.1	Wheat	cytosol, golgi	80.13	58.69
EES13169	Sorghum	cytosol	80.77	58.6
GSMUA_Achr7P03080_001	Banana	cytosol	78.85	58.57
TraesCS2D01G567100.1	Wheat	cytosol	80.77	58.06
TraesCS2B01G617000.1	Wheat	cytosol	80.77	58.06
KRH64034	Soybean	cytosol	76.92	57.97
HORVU2Hr1G127520.1	Barley	cytosol	80.13	57.87
HORVU2Hr1G127540.1	Barley	cytosol	80.13	57.87
HORVU1Hr1G025450.1	Barley	endoplasmic reticulum	52.56	57.75
TraesCSU01G137100.1	Wheat	cytosol, plastid	80.77	57.53
KRH53905	Soybean	cytosol	76.28	57.49
VIT_18s0001g15090.t01	Wine grape	plastid	81.41	53.59
CDX70301	Canola	cytosol	71.79	53.33
CDY04887	Canola	cytosol	72.44	53.3
CDY10375	Canola	cytosol	71.15	52.86
CDY44372	Canola	cytosol	71.79	52.83
CDY41571	Canola	cytosol	67.95	51.96
CDY54608	Canola	cytosol	67.31	51.47
GSMUA_Achr5P15600_001	Banana	cytosol	37.18	37.66
CDY51571	Canola	cytosol	13.46	23.33
CDY11028	Canola	cytosol	10.26	18.18

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:A0A078JUI0	UniProt:A0A078JUI0	EnsemblPlants:CDY69246	ProteinID:CDY69246
ProteinID:CDY69246.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00084266001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EE0FD0	SEG:seg

Description

BnaAnng29790DBnaAnng29790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUI0]

Coordinates

chrLK038942:-:69..1496

Molecular Weight (calculated)

17558.1 Da

IEP (calculated)

9.603

GRAVY (calculated)

-0.239

Length

156 amino acids

Sequence
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK RRHRLCSGVR MFVSGV

Best Arabidopsis Sequence Match ( AT1G43890.1 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.