Factsheet for VIT_18s0001g15090.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14967	Canola	cytosol	76.79	85.85
CDY47787	Canola	cytosol	76.37	85.38
AT1G43890.1	Thale cress	cytosol	76.37	85.38
Bra032196.1-P	Field mustard	cytosol	76.37	84.98
CDY43856	Canola	cytosol	76.37	84.98
Bra036934.1-P	Field mustard	cytosol	75.95	84.91
CDY35803	Canola	cytosol	75.53	84.43
KRH43557	Soybean	cytosol	74.26	84.21
KRH59573	Soybean	endoplasmic reticulum	74.26	84.21
Bra034924.1-P	Field mustard	cytosol	75.11	83.96
CDY51571	Canola	cytosol	31.65	83.33
KRH53905	Soybean	cytosol	71.31	81.64
KRH64034	Soybean	cytosol	71.31	81.64
CDY69246	Canola	cytosol	53.59	81.41
VIT_08s0007g04740.t01	Wine grape	cytosol	61.6	69.19
VIT_00s1603g00010.t01	Wine grape	cytosol	15.19	60.0
VIT_13s0019g05190.t01	Wine grape	cytosol	51.48	57.55
VIT_13s0019g05280.t01	Wine grape	cytosol	32.91	47.27
VIT_15s0024g00940.t01	Wine grape	cytosol, endoplasmic reticulum	19.41	32.17
VIT_13s0047g01030.t01	Wine grape	mitochondrion	15.61	28.46

Protein Annotations

EntrezGene:100266035	wikigene:100266035	MapMan:22.8.1.3	Gene3D:3.40.50.300	EMBL:AM434783	ProteinID:CAN76031
ProteinID:CAN76031.1	ProteinID:CCB46081	ProteinID:CCB46081.1	UniProt:F6GZU4	EMBL:FN595227	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0016787	EntrezGene:LOC100266035
wikigene:LOC100266035	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF874	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC58728	TIGRFAMs:TIGR00231	UniParc:UPI000210A662
ArrayExpress:VIT_18s0001g15090	EnsemblPlantsGene:VIT_18s0001g15090	EnsemblPlants:VIT_18s0001g15090.t01	unigene:Vvi.6303	RefSeq:XP_002267387	RefSeq:XP_002267387.1
RefSeq:XP_003634396	RefSeq:XP_003634396.1	:	:	:	:

Description

No Description!

Coordinates

chr18:-:13133931..13152578

Molecular Weight (calculated)

26607.8 Da

IEP (calculated)

7.056

GRAVY (calculated)

-0.248

Length

237 amino acids

Sequence
(BLAST)

001: MNSLSNPFVS FFQILTQTQW PNSVRKMLPD SSSSQPEFDY LFKLLLIGDS GVGKSTLLLS FTSNTFEDLS PTIGVDFKVK HVNIGGKKLK LAIWDTAGQE
101: RFRTLTSSYY RGAQGVIMVY DVTRRETFTN LSDIWAKEID LYSTNQDCIK MLVGNKVDKE SERVVTKKEG IDFAREYGCL FLECSAKTRV NVEQCFEELV
201: LKILETPSLL AEGSSGVRKN IFKQKPPESD ASTSGCC

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.