Factsheet for VIT_13s0019g05190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34658	Soybean	cytosol	71.23	71.23
KRG92126	Soybean	endoplasmic reticulum	70.75	70.75
Solyc11g008020.1.1	Tomato	cytosol	69.81	68.52
VIT_08s0007g04740.t01	Wine grape	cytosol	67.92	68.25
PGSC0003DMT400079770	Potato	cytosol	69.34	68.06
VIT_13s0019g05280.t01	Wine grape	cytosol	40.57	52.12
VIT_00s1603g00010.t01	Wine grape	cytosol	14.62	51.67
VIT_18s0001g15090.t01	Wine grape	plastid	57.55	51.48
VIT_13s0047g01030.t01	Wine grape	mitochondrion	16.98	27.69
VIT_15s0024g00940.t01	Wine grape	cytosol, endoplasmic reticulum	17.45	25.87

Protein Annotations

EntrezGene:100259759	wikigene:100259759	MapMan:22.8.1.3	Gene3D:3.40.50.300	ProteinID:CBI31392	ProteinID:CBI31392.3
UniProt:D7TM25	EMBL:FN595998	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005507	GO:GO:0005515	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005794
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016787	GO:GO:0046983	GO:GO:0055114	EntrezGene:LOC100259759
wikigene:LOC100259759	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF643	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00015C9749	ArrayExpress:VIT_13s0019g05190	EnsemblPlantsGene:VIT_13s0019g05190
EnsemblPlants:VIT_13s0019g05190.t01	RefSeq:XP_002265762	RefSeq:XP_002265762.2	:	:	:

Description

No Description!

Coordinates

chr13:-:7011635..7018895

Molecular Weight (calculated)

23850.8 Da

IEP (calculated)

7.984

GRAVY (calculated)

-0.203

Length

212 amino acids

Sequence
(BLAST)

001: MGSSSLGRGK NSYDCSFKIL LIGDSGVGKS SLLLSFISGS VHDLSPTIGV DFKIMLLTIG GKRLKLTIWD TAGQERFGTL TNSYYRGAHG IILVYDVTRR
101: ESFTNLLDVW AKEVELYSTN HECIKFLVGN KVDRDCERAV TREEGMSLAQ EHKCSFLECS AKTRENVQQC FKELTLKILQ VPSLLEQGSR VVERQTLMQK
201: ELYQESPRSC CF

Best Arabidopsis Sequence Match ( AT5G03530.1 )
(BLAST)

001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS

Arabidopsis Description

RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.