CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34658	Soybean	cytosol	94.34	94.34
VIT_13s0019g05190.t01	Wine grape	cytosol	70.75	70.75
PGSC0003DMT400079770	Potato	cytosol	69.34	68.06
Solyc11g008020.1.1	Tomato	cytosol	69.34	68.06
KRG96048	Soybean	cytosol	65.57	65.88
KRH67770	Soybean	endoplasmic reticulum	65.57	65.88
KRH19962	Soybean	cytosol	63.68	63.98
KRH32565	Soybean	extracellular	63.68	63.68
KRH15908	Soybean	mitochondrion	59.43	58.88
KRH18093	Soybean	endoplasmic reticulum	59.43	58.6
KRH59573	Soybean	endoplasmic reticulum	57.55	58.37
KRH64034	Soybean	cytosol	56.13	57.49
KRH53905	Soybean	cytosol	55.66	57.0
KRH43557	Soybean	cytosol	56.13	56.94
KRH55263	Soybean	cytosol	23.11	34.03

Protein Annotations

EntrezGene:100809867	MapMan:22.8.1.3	Gene3D:3.40.50.300	EMBL:ACUP02012732	EnsemblPlantsGene:GLYMA_20G192600	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0016787	UniProt:K7N4G3
EnsemblPlants:KRG92126	ProteinID:KRG92126	ProteinID:KRG92126.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF643	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000233DB35
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:43155068..43160431

Molecular Weight (calculated)

23593.2 Da

IEP (calculated)

9.164

GRAVY (calculated)

-0.275

Length

212 amino acids

Sequence
(BLAST)

001: MGSDSRVGSS NYDYSFKVLL VGDSGVGKSS LLLSFISNSN SINHLSPTIG VDFKIKLFTV GGKRLKLTIW DTAGQERFGT VIGSYYRGAH GIILVYDVTR
101: RETFTNLIDI WAKEVELYST NHDSIKILVG NKVDKESERA VSKEEGMALA QQHRCLFLEC SAKTRENVQQ CFNDLTLKIL DVPSLRERGS VAVKRQKQKH
201: IYETSKSGGC CS

Best Arabidopsis Sequence Match ( AT1G43890.1 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.