CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96048	Soybean	cytosol	99.53	99.53
KRH19962	Soybean	cytosol	86.26	86.26
KRH32565	Soybean	extracellular	84.83	84.43
VIT_08s0007g04740.t01	Wine grape	cytosol	84.36	84.36
CDX70301	Canola	cytosol	82.94	83.33
AT5G03530.1	Thale cress	cytosol	82.46	82.86
CDY10375	Canola	cytosol	82.46	82.86
Bra009524.1-P	Field mustard	cytosol	82.46	82.86
CDY44372	Canola	cytosol	82.94	82.55
CDY04887	Canola	cytosol	82.46	82.08
Bra028830.1-P	Field mustard	cytosol	82.46	82.08
Solyc09g008460.2.1	Tomato	plastid	81.04	79.17
PGSC0003DMT400009952	Potato	cytosol	80.57	78.7
Solyc10g086310.1.1	Tomato	cytosol	76.3	77.03
PGSC0003DMT400049302	Potato	cytosol	77.73	76.28
CDY41571	Canola	cytosol	73.46	75.98
CDY54608	Canola	cytosol	73.46	75.98
AT3G09910.1	Thale cress	cytosol	73.46	75.61
Bra029804.1-P	Field mustard	cytosol	72.04	74.51
CDY11028	Canola	cytosol	30.33	72.73
GSMUA_Achr11P...	Banana	cytosol	70.14	70.14
Os03t0146000-01	Rice	plasma membrane	66.82	67.14
EER95509	Sorghum	cytosol	66.82	67.14
GSMUA_AchrUn_...	Banana	cytosol	67.77	66.82
TraesCS4B01G310800.1	Wheat	cytosol, extracellular	65.4	66.67
TraesCS4A01G410700.1	Wheat	cytosol, extracellular	64.93	66.18
KRH18093	Soybean	endoplasmic reticulum	67.3	66.05
KRH15908	Soybean	mitochondrion	66.82	65.89
TraesCS4D01G308700.1	Wheat	cytosol, extracellular	64.45	65.7
KRH53905	Soybean	cytosol	64.45	65.7
KRG92126	Soybean	endoplasmic reticulum	65.88	65.57
EER91530	Sorghum	cytosol	67.3	65.44
KRH64034	Soybean	cytosol	63.98	65.22
KRH34658	Soybean	cytosol	65.4	65.09
KRH43557	Soybean	cytosol	64.45	65.07
Os10t0456600-01	Rice	cytosol	68.25	64.86
KRH59573	Soybean	endoplasmic reticulum	63.98	64.59
TraesCS1A01G143100.1	Wheat	cytosol	66.35	64.52
TraesCS1B01G158500.1	Wheat	cytosol	66.35	64.52
HORVU1Hr1G038070.1	Barley	cytosol	65.88	64.06
TraesCS1D01G142000.1	Wheat	cytosol, extracellular	64.93	64.02
Zm00001d032811_P002	Maize	cytosol	67.77	57.89
Zm00001d014097_P002	Maize	cytosol	67.3	57.49
HORVU4Hr1G079250.1	Barley	cytosol, plastid	64.45	54.62
Zm00001d048393_P001	Maize	plastid	64.45	44.01
KRH55263	Soybean	cytosol	25.59	37.5

Protein Annotations

EntrezGene:100799887	MapMan:22.8.1.3	Gene3D:3.40.50.300	EMBL:ACUP02002081	EnsemblPlantsGene:GLYMA_03G186200	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0016787	UniProt:I1JPS2
EnsemblPlants:KRH67770	ProteinID:KRH67770	ProteinID:KRH67770.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF579	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0002339492	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:39790693..39794990

Molecular Weight (calculated)

23153.6 Da

IEP (calculated)

5.479

GRAVY (calculated)

-0.233

Length

211 amino acids

Sequence
(BLAST)

001: MSSSSGQSSG YDLSFKILLI GDSGVGKSSL LVSFISSSVE DLSPTIGVDF KIKTLTVGGK RLKLTIWDTA GQERFRTLNS SYYRKAQGII LVYDVTRRET
101: FTNLSEVWSK EVELYSTNQD CVKILVGNKV DRDTERAVSR EEGLALAKEL GCLLLECSAK TRENVEQCFE ELALKIMEAP SLLEEGSTAV KRSVLKPKQE
201: SQASQNGGCC S

Best Arabidopsis Sequence Match ( AT5G03530.1 )
(BLAST)

001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS

Arabidopsis Description

RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.