Factsheet for Solyc10g086310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049302	Potato	cytosol	96.17	93.49
Solyc09g008460.2.1	Tomato	plastid	83.73	81.02
VIT_08s0007g04740.t01	Wine grape	cytosol	80.38	79.62
CDY10375	Canola	cytosol	79.9	79.52
AT5G03530.1	Thale cress	cytosol	79.43	79.05
KRH19962	Soybean	cytosol	78.95	78.2
CDX70301	Canola	cytosol	78.47	78.1
Bra028830.1-P	Field mustard	cytosol	78.95	77.83
CDY44372	Canola	cytosol	78.95	77.83
Bra009524.1-P	Field mustard	cytosol	77.99	77.62
CDY04887	Canola	cytosol	78.47	77.36
KRH32565	Soybean	extracellular	78.47	77.36
CDY54608	Canola	cytosol	74.64	76.47
CDY41571	Canola	cytosol	74.64	76.47
KRH67770	Soybean	endoplasmic reticulum	77.03	76.3
CDY11028	Canola	cytosol	32.06	76.14
Bra029804.1-P	Field mustard	cytosol	74.16	75.98
KRG96048	Soybean	cytosol	76.56	75.83
AT3G09910.1	Thale cress	cytosol	73.21	74.63
Solyc04g064510.2.1	Tomato	cytosol	69.38	69.38
GSMUA_Achr11P...	Banana	cytosol	67.46	66.82
GSMUA_AchrUn_...	Banana	cytosol	66.99	65.42
Os03t0146000-01	Rice	plasma membrane	64.11	63.81
TraesCS4B01G310800.1	Wheat	cytosol, extracellular	62.2	62.8
TraesCS4D01G308700.1	Wheat	cytosol, extracellular	62.2	62.8
TraesCS4A01G410700.1	Wheat	cytosol, extracellular	61.72	62.32
HORVU1Hr1G038070.1	Barley	cytosol	64.59	62.21
EER91530	Sorghum	cytosol	64.59	62.21
TraesCS1D01G142000.1	Wheat	cytosol, extracellular	63.64	62.15
EER95509	Sorghum	cytosol	62.2	61.9
TraesCS1A01G143100.1	Wheat	cytosol	63.64	61.29
TraesCS1B01G158500.1	Wheat	cytosol	63.64	61.29
Solyc11g008020.1.1	Tomato	cytosol	62.2	60.19
Os10t0456600-01	Rice	cytosol	63.16	59.46
Zm00001d032811_P002	Maize	cytosol	63.64	53.85
Zm00001d014097_P002	Maize	cytosol	63.16	53.44
HORVU4Hr1G079250.1	Barley	cytosol, plastid	61.72	51.81
Zm00001d048393_P001	Maize	plastid	61.24	41.42

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0016787	UniProt:K4D463	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF579	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc10g086310.1	EnsemblPlants:Solyc10g086310.1.1
TIGRFAMs:TIGR00231	UniParc:UPI00027694C1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:-:65177681..65179081

Molecular Weight (calculated)

23226.9 Da

IEP (calculated)

5.447

GRAVY (calculated)

-0.171

Length

209 amino acids

Sequence
(BLAST)

001: MQNSSSYDLS FKILLIGDSG VGKSSLLLSF ISNAVDDVTP TIGVDFKIKT LTVGGKRLKL TIWDTAGQEK FRTLTSSYFR GAQGIILVYD VTRRDTFTNL
101: SDVWAKEVEL YCTNEDCVKM LVGNKVDRES ERVVRREEGV ALAKELGSLF LECSAKTRAN VEQCFEELTL KIMEVPSLLE EGSVSGKKNI LIQKQQQQQT
201: TQSLSSCCS

Best Arabidopsis Sequence Match ( AT5G03530.1 )
(BLAST)

001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS

Arabidopsis Description

RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.