Factsheet for TraesCS1D01G142000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G158500.1	Wheat	cytosol	94.39	93.09
TraesCS1A01G143100.1	Wheat	cytosol	94.39	93.09
HORVU1Hr1G038070.1	Barley	cytosol	93.93	92.63
EER91530	Sorghum	cytosol	85.51	84.33
TraesCS4D01G308700.1	Wheat	cytosol, extracellular	79.44	82.13
Os10t0456600-01	Rice	cytosol	85.05	81.98
Zm00001d032811_P002	Maize	cytosol	85.05	73.68
Zm00001d014097_P002	Maize	cytosol	84.11	72.87
GSMUA_AchrUn_...	Banana	cytosol	70.56	70.56
GSMUA_Achr11P...	Banana	cytosol	69.16	70.14
VIT_08s0007g04740.t01	Wine grape	cytosol	66.82	67.77
KRH19962	Soybean	cytosol	66.36	67.3
CDY10375	Canola	cytosol	65.89	67.14
Solyc09g008460.2.1	Tomato	plastid	67.76	67.13
KRH32565	Soybean	extracellular	66.36	66.98
PGSC0003DMT400009952	Potato	cytosol	66.82	66.2
AT5G03530.1	Thale cress	cytosol	64.95	66.19
CDX70301	Canola	cytosol	64.95	66.19
CDY44372	Canola	cytosol	65.42	66.04
CDY04887	Canola	cytosol	65.42	66.04
Bra028830.1-P	Field mustard	cytosol	65.42	66.04
Bra009524.1-P	Field mustard	cytosol	64.49	65.71
KRH67770	Soybean	endoplasmic reticulum	64.02	64.93
CDY11028	Canola	cytosol	26.64	64.77
KRG96048	Soybean	cytosol	63.55	64.45
AT3G09910.1	Thale cress	cytosol	61.22	63.9
CDY41571	Canola	cytosol	60.75	63.73
Solyc10g086310.1.1	Tomato	cytosol	62.15	63.64
CDY54608	Canola	cytosol	60.28	63.24
PGSC0003DMT400049302	Potato	cytosol	63.08	62.79
Bra029804.1-P	Field mustard	cytosol	59.81	62.75
TraesCS2D01G567100.1	Wheat	cytosol	57.01	56.22

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF879	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS1D01G142000	EnsemblPlants:TraesCS1D01G142000.1	TIGR:cd01863	:	:	:

Description

No Description!

Coordinates

chr1D:-:196485679..196489045

Molecular Weight (calculated)

23409.9 Da

IEP (calculated)

5.453

GRAVY (calculated)

-0.214

Length

214 amino acids

Sequence
(BLAST)

001: MGVSPGGSAG YECSFKILLI GDSGVGKSSL LVSFVAAANL DDDIAPTIGV DFKIKFLTVG GKKLKLTIWD TAGQERFRTI TSSYYRGAQG IILVYDVAKR
101: ESFTNLGDVW TKEIDSNSSN KDCIKMLVGN KVDKDDERTV TREEGLAFAQ ESGCLFLESS AKTRENVENC FEELVLKILE VPSLLEEGSS SVVKRNILKK
201: QQESHAKYGG RCCQ

Best Arabidopsis Sequence Match ( AT1G43890.1 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.