Factsheet for Solyc09g008460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009952	Potato	cytosol	98.61	98.61
VIT_08s0007g04740.t01	Wine grape	cytosol	84.72	86.73
CDY10375	Canola	cytosol	81.48	83.81
Solyc10g086310.1.1	Tomato	cytosol	81.02	83.73
AT5G03530.1	Thale cress	cytosol	81.02	83.33
CDX70301	Canola	cytosol	80.09	82.38
Bra028830.1-P	Field mustard	cytosol	80.56	82.08
CDY44372	Canola	cytosol	80.56	82.08
Bra009524.1-P	Field mustard	cytosol	79.63	81.9
CDY04887	Canola	cytosol	80.09	81.6
KRH19962	Soybean	cytosol	79.63	81.52
KRH32565	Soybean	extracellular	79.63	81.13
KRH67770	Soybean	endoplasmic reticulum	79.17	81.04
KRG96048	Soybean	cytosol	78.7	80.57
CDY11028	Canola	cytosol	32.41	79.55
CDY54608	Canola	cytosol	73.15	77.45
CDY41571	Canola	cytosol	72.69	76.96
AT3G09910.1	Thale cress	cytosol	72.22	76.1
Bra029804.1-P	Field mustard	cytosol	71.76	75.98
GSMUA_Achr11P...	Banana	cytosol	68.98	70.62
Os03t0146000-01	Rice	plasma membrane	68.52	70.48
GSMUA_AchrUn_...	Banana	cytosol	68.98	69.63
EER95509	Sorghum	cytosol	66.67	68.57
TraesCS1D01G142000.1	Wheat	cytosol, extracellular	67.13	67.76
TraesCS4B01G310800.1	Wheat	cytosol, extracellular	64.81	67.63
Solyc04g064510.2.1	Tomato	cytosol	65.28	67.46
EER91530	Sorghum	cytosol	67.59	67.28
TraesCS1B01G158500.1	Wheat	cytosol	67.59	67.28
TraesCS1A01G143100.1	Wheat	cytosol	67.59	67.28
HORVU1Hr1G038070.1	Barley	cytosol	67.59	67.28
TraesCS4A01G410700.1	Wheat	cytosol, extracellular	64.35	67.15
TraesCS4D01G308700.1	Wheat	cytosol, extracellular	64.35	67.15
Os10t0456600-01	Rice	cytosol	67.59	65.77
Solyc11g008020.1.1	Tomato	cytosol	63.43	63.43
Zm00001d032811_P002	Maize	cytosol	67.13	58.7
Zm00001d014097_P002	Maize	cytosol	66.67	58.3
HORVU4Hr1G079250.1	Barley	cytosol, plastid	63.89	55.42
Zm00001d048393_P001	Maize	plastid	65.28	45.63

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0016787	UniProt:K4CQN4	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF579	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc09g008460.2
EnsemblPlants:Solyc09g008460.2.1	TIGRFAMs:TIGR00231	UniParc:UPI000276BEFA	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:1905656..1911197

Molecular Weight (calculated)

23650.2 Da

IEP (calculated)

5.454

GRAVY (calculated)

-0.274

Length

216 amino acids

Sequence
(BLAST)

001: MGPSTATTGQ SNSSYDLSFK ILLIGDSGVG KSSLLVSFIS NAVDDLAPTI GVDFKIKTLT VSGKKLKLTI WDTAGQERFR TLTSSYYRGA QGIILVYDVT
101: RRETFTNLSD VWAKEVELYS NNQDCVKMLV GNKVDRESER AVTREEGIAL AKELGGLFLE CSAKTRENVQ NCFEELALKI MEVPSLLEEG STVGKRNILK
201: QKQEQQTQQG GGGCCS

Best Arabidopsis Sequence Match ( AT5G03530.1 )
(BLAST)

001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS

Arabidopsis Description

RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.