CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0146000-01	Rice	plasma membrane	90.0	90.0
TraesCS4B01G310800.1	Wheat	cytosol, extracellular	88.57	89.86
TraesCS4A01G410700.1	Wheat	cytosol, extracellular	88.57	89.86
TraesCS4D01G308700.1	Wheat	cytosol, extracellular	88.1	89.37
EER91530	Sorghum	cytosol	83.33	80.65
GSMUA_Achr11P...	Banana	cytosol	74.76	74.41
HORVU4Hr1G079250.1	Barley	cytosol, plastid	88.1	74.3
GSMUA_AchrUn_...	Banana	cytosol	74.29	72.9
KRH32565	Soybean	extracellular	70.95	70.28
VIT_08s0007g04740.t01	Wine grape	cytosol	70.48	70.14
KRH19962	Soybean	cytosol	70.0	69.67
AT5G03530.1	Thale cress	cytosol	68.1	68.1
CDX70301	Canola	cytosol	67.14	67.14
CDY10375	Canola	cytosol	67.14	67.14
KRH67770	Soybean	endoplasmic reticulum	67.14	66.82
Bra009524.1-P	Field mustard	cytosol	66.67	66.67
Solyc09g008460.2.1	Tomato	plastid	68.57	66.67
KRG96048	Soybean	cytosol	66.67	66.35
PGSC0003DMT400009952	Potato	cytosol	68.1	66.2
Zm00001d048393_P001	Maize	plastid	96.67	65.7
CDY04887	Canola	cytosol	65.71	65.09
CDY44372	Canola	cytosol	65.71	65.09
Bra028830.1-P	Field mustard	cytosol	65.71	65.09
CDY11028	Canola	cytosol	27.14	64.77
CDY41571	Canola	cytosol	61.43	63.24
CDY54608	Canola	cytosol	61.43	63.24
AT3G09910.1	Thale cress	cytosol	60.95	62.44
Solyc10g086310.1.1	Tomato	cytosol	61.9	62.2
PGSC0003DMT400049302	Potato	cytosol	63.33	61.86
Bra029804.1-P	Field mustard	cytosol	59.52	61.27
EES13169	Sorghum	cytosol	59.05	57.67

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	EntrezGene:8085485	UniProt:C5WXZ0	EnsemblPlants:EER95509	ProteinID:EER95509
ProteinID:EER95509.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF879	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3001G505200
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A8306F	RefSeq:XP_002468511.1

Description

hypothetical protein

Coordinates

chr1:-:77330994..77338501

Molecular Weight (calculated)

23161.7 Da

IEP (calculated)

5.800

GRAVY (calculated)

-0.209

Length

210 amino acids

Sequence
(BLAST)

001: MASSPASSYD CSFKVLLIGD SAVGKSSLLV SFVSAAHIDD DIAPTIGVDF KIKFLSVGGK KLKLTIWDTA GQERFRTITS SYYRGAHGII LVYDVTKRES
101: FTNLAEVWTK EIELHSTNKE CVKMLVGNKV DKDEDRMVTK EEGLAFAQEC GCLFVESSAK TRENVEKCFE ELALKILEVP SLLEEGSSVV KRNTLKQKQE
201: NSNQSGGCCQ

Best Arabidopsis Sequence Match ( AT5G03530.1 )
(BLAST)

001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS

Arabidopsis Description

RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.