Factsheet for PGSC0003DMT400049302

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086310.1.1	Tomato	cytosol	93.49	96.17
PGSC0003DMT400009952	Potato	cytosol	85.12	84.72
VIT_08s0007g04740.t01	Wine grape	cytosol	80.0	81.52
CDY10375	Canola	cytosol	78.6	80.48
AT5G03530.1	Thale cress	cytosol	78.14	80.0
KRH19962	Soybean	cytosol	78.14	79.62
CDX70301	Canola	cytosol	77.21	79.05
KRH32565	Soybean	extracellular	77.67	78.77
Bra028830.1-P	Field mustard	cytosol	77.67	78.77
CDY44372	Canola	cytosol	77.67	78.77
Bra009524.1-P	Field mustard	cytosol	76.74	78.57
CDY04887	Canola	cytosol	77.21	78.3
CDY54608	Canola	cytosol	73.95	77.94
KRH67770	Soybean	endoplasmic reticulum	76.28	77.73
CDY41571	Canola	cytosol	73.49	77.45
Bra029804.1-P	Field mustard	cytosol	73.49	77.45
CDY11028	Canola	cytosol	31.63	77.27
KRG96048	Soybean	cytosol	75.81	77.25
AT3G09910.1	Thale cress	cytosol	72.09	75.61
PGSC0003DMT400063864	Potato	cytosol	66.51	68.42
GSMUA_Achr11P...	Banana	cytosol	65.58	66.82
GSMUA_AchrUn_...	Banana	cytosol	65.58	65.89
Os03t0146000-01	Rice	plasma membrane	63.72	65.24
TraesCS4B01G310800.1	Wheat	cytosol, extracellular	61.86	64.25
EER91530	Sorghum	cytosol	64.65	64.06
TraesCS4A01G410700.1	Wheat	cytosol, extracellular	61.4	63.77
TraesCS4D01G308700.1	Wheat	cytosol, extracellular	61.4	63.77
HORVU1Hr1G038070.1	Barley	cytosol	64.19	63.59
PGSC0003DMT400079770	Potato	cytosol	63.72	63.43
EER95509	Sorghum	cytosol	61.86	63.33
TraesCS1D01G142000.1	Wheat	cytosol, extracellular	62.79	63.08
TraesCS1A01G143100.1	Wheat	cytosol	63.26	62.67
TraesCS1B01G158500.1	Wheat	cytosol	63.26	62.67
Os10t0456600-01	Rice	cytosol	63.26	61.26
Zm00001d032811_P002	Maize	cytosol	64.19	55.87
Zm00001d014097_P002	Maize	cytosol	63.72	55.47
HORVU4Hr1G079250.1	Barley	cytosol, plastid	61.4	53.01
Zm00001d048393_P001	Maize	plastid	60.93	42.39

Protein Annotations

EntrezGene:102588475	MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1BNJ0	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400019161	PGSC:PGSC0003DMG400019161	EnsemblPlants:PGSC0003DMT400049302	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF579	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002968DA9
RefSeq:XP_006349546.2	SEG:seg	:	:	:	:

Description

AtRab GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019161]

Coordinates

chr10:+:51455616..51457247

Molecular Weight (calculated)

23623.2 Da

IEP (calculated)

5.131

GRAVY (calculated)

-0.176

Length

215 amino acids

Sequence
(BLAST)

001: MGSSTATQSS SSYDLSFKIL LIGDSGVGKS SLLLSFISNA VDDITPTIGV DFKIKTLTVG GKRLKLTIWD TAGQEKFRTL TSSYFRGAQG IILVYDVTRR
101: DTFTNLSDVW AKEVELYCTN EDCVKMLVGN KVDRESERAV SREEGVALAK ELGSLFLECS AKTRANVEQC FEELTLKIME VPSLLEEGST SGKKNILIQK
201: QQQQQTTQSL SSCCS

Best Arabidopsis Sequence Match ( AT5G03530.1 )
(BLAST)

001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS

Arabidopsis Description

RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.