Factsheet for Zm00001d032811_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014097_P002	Maize	cytosol	94.33	94.33
EER91530	Sorghum	cytosol	82.59	94.01
Os10t0456600-01	Rice	cytosol	78.95	87.84
TraesCS1A01G143100.1	Wheat	cytosol	76.52	87.1
TraesCS1B01G158500.1	Wheat	cytosol	76.11	86.64
HORVU1Hr1G038070.1	Barley	cytosol	76.11	86.64
TraesCS1D01G142000.1	Wheat	cytosol, extracellular	73.68	85.05
GSMUA_Achr11P...	Banana	cytosol	63.97	74.88
GSMUA_AchrUn_...	Banana	cytosol	63.56	73.36
KRH19962	Soybean	cytosol	59.11	69.19
VIT_08s0007g04740.t01	Wine grape	cytosol	58.7	68.72
AT5G03530.1	Thale cress	cytosol	57.89	68.1
CDY10375	Canola	cytosol	57.89	68.1
CDX70301	Canola	cytosol	57.89	68.1
KRH32565	Soybean	extracellular	58.3	67.92
KRH67770	Soybean	endoplasmic reticulum	57.89	67.77
Bra009524.1-P	Field mustard	cytosol	57.49	67.62
KRG96048	Soybean	cytosol	57.49	67.3
Solyc09g008460.2.1	Tomato	plastid	58.7	67.13
CDY11028	Canola	cytosol	23.89	67.05
CDY44372	Canola	cytosol	57.49	66.98
CDY04887	Canola	cytosol	57.49	66.98
Bra028830.1-P	Field mustard	cytosol	57.49	66.98
PGSC0003DMT400009952	Potato	cytosol	58.3	66.67
CDY54608	Canola	cytosol	53.44	64.71
CDY41571	Canola	cytosol	53.44	64.71
PGSC0003DMT400049302	Potato	cytosol	55.87	64.19
AT3G09910.1	Thale cress	cytosol	53.04	63.9
Bra029804.1-P	Field mustard	cytosol	52.63	63.73
Solyc10g086310.1.1	Tomato	cytosol	53.85	63.64
Zm00001d048393_P001	Maize	plastid	70.45	56.31

Protein Annotations

EntrezGene:100285919	MapMan:35.1	UniProt:A0A1D6KU62	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	ProteinID:ONM06117.1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF879	SMART:SM00173
SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI00084261C8	EnsemblPlantsGene:Zm00001d032811	EnsemblPlants:Zm00001d032811_P002	EnsemblPlants:Zm00001d032811_T002	:	:

Description

Ras-related protein Rab-18

Coordinates

chr1:+:239017457..239027927

Molecular Weight (calculated)

27147.6 Da

IEP (calculated)

7.406

GRAVY (calculated)

-0.133

Length

247 amino acids

Sequence
(BLAST)

001: MGSPGAGSSG GHECSFKILL IGDSGVGKSS LLVSFVAASH LDGDIAPTIG VDFKIKFLTV GGKKLKLTIW DTGHRVLFVY VYLWVGSLKS LWLHCSLLRR
101: ACHQAGQERF RTITSSYYRG AQGIILVYDV TKRESFSNLA DVWTKEIEAN STNKDCIKML VGNKVDKDDE RMVTEEEGLA FAEESGCLFL ESSAKTRENV
201: EKCFEELALK ILEVPSLLEE GSSSVVKRNI LKQKQESHAK NGSGCCQ

Best Arabidopsis Sequence Match ( AT1G43890.1 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.