Factsheet for Bra028830.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04887	Canola	cytosol	99.53	99.53
CDY44372	Canola	cytosol	99.06	99.06
Bra009524.1-P	Field mustard	cytosol	94.81	95.71
AT5G03530.1	Thale cress	cytosol	91.98	92.86
VIT_08s0007g04740.t01	Wine grape	cytosol	84.43	84.83
KRH19962	Soybean	cytosol	82.55	82.94
KRH67770	Soybean	endoplasmic reticulum	82.08	82.46
KRH32565	Soybean	extracellular	82.08	82.08
KRG96048	Soybean	cytosol	81.6	81.99
Solyc09g008460.2.1	Tomato	plastid	82.08	80.56
PGSC0003DMT400009952	Potato	cytosol	81.6	80.09
Bra029804.1-P	Field mustard	cytosol	76.42	79.41
Solyc10g086310.1.1	Tomato	cytosol	77.83	78.95
PGSC0003DMT400049302	Potato	cytosol	78.77	77.67
Bra036934.1-P	Field mustard	cytosol	72.17	72.17
Bra034924.1-P	Field mustard	cytosol	72.17	72.17
Bra032196.1-P	Field mustard	cytosol	72.17	71.83
GSMUA_Achr11P...	Banana	cytosol	69.34	69.67
GSMUA_AchrUn_...	Banana	cytosol	69.81	69.16
TraesCS4B01G310800.1	Wheat	cytosol, extracellular	65.57	67.15
Os03t0146000-01	Rice	plasma membrane	66.51	67.14
TraesCS4A01G410700.1	Wheat	cytosol, extracellular	65.09	66.67
EER91530	Sorghum	cytosol	67.92	66.36
TraesCS4D01G308700.1	Wheat	cytosol, extracellular	64.62	66.18
EER95509	Sorghum	cytosol	65.09	65.71
TraesCS1D01G142000.1	Wheat	cytosol, extracellular	66.04	65.42
Os10t0456600-01	Rice	cytosol	67.45	64.41
TraesCS1A01G143100.1	Wheat	cytosol	65.57	64.06
TraesCS1B01G158500.1	Wheat	cytosol	65.57	64.06
HORVU1Hr1G038070.1	Barley	cytosol	65.57	64.06
Zm00001d032811_P002	Maize	cytosol	66.98	57.49
Zm00001d014097_P002	Maize	cytosol	66.51	57.09
HORVU4Hr1G079250.1	Barley	cytosol, plastid	64.62	55.02
Zm00001d048393_P001	Maize	plastid	64.15	44.01

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra028830	EnsemblPlants:Bra028830.1	EnsemblPlants:Bra028830.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4EJ64	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	ScanProsite:PS00675	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF579	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Sigma_54_int_dom_ATP-bd_1	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0002543027	SEG:seg	:	:	:	:

Description

AT5G03530 (E=8e-100) ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding

Coordinates

chrA02:-:1845994..1849855

Molecular Weight (calculated)

23468.0 Da

IEP (calculated)

5.147

GRAVY (calculated)

-0.231

Length

212 amino acids

Sequence
(BLAST)

001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISNAVED LAPTIGVDFK IKQLTVGDKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWSKE IELYSTNQDC VTMLVGNKVD RESERGVSRE EGIALAKELK CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQNSSE
201: HQTTPQAGCC SS

Best Arabidopsis Sequence Match ( AT5G03530.1 )
(BLAST)

001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS

Arabidopsis Description

RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.