CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0456600-01	Rice	cytosol	87.56	85.59
TraesCS1D01G142000.1	Wheat	cytosol, extracellular	84.33	85.51
TraesCS1A01G143100.1	Wheat	cytosol	85.25	85.25
TraesCS1B01G158500.1	Wheat	cytosol	84.79	84.79
HORVU1Hr1G038070.1	Barley	cytosol	84.33	84.33
EER95509	Sorghum	cytosol	80.65	83.33
Zm00001d032811_P002	Maize	cytosol	94.01	82.59
Zm00001d014097_P002	Maize	cytosol	93.55	82.19
GSMUA_Achr11P...	Banana	cytosol	70.05	72.04
GSMUA_AchrUn_...	Banana	cytosol	70.51	71.5
KRH19962	Soybean	cytosol	68.2	70.14
KRH32565	Soybean	extracellular	67.74	69.34
CDY11028	Canola	cytosol	28.11	69.32
VIT_08s0007g04740.t01	Wine grape	cytosol	67.28	69.19
CDY10375	Canola	cytosol	66.82	69.05
AT5G03530.1	Thale cress	cytosol	66.82	69.05
CDX70301	Canola	cytosol	65.9	68.1
CDY04887	Canola	cytosol	66.36	67.92
CDY44372	Canola	cytosol	66.36	67.92
Bra028830.1-P	Field mustard	cytosol	66.36	67.92
Bra009524.1-P	Field mustard	cytosol	65.44	67.62
Solyc09g008460.2.1	Tomato	plastid	67.28	67.59
KRH67770	Soybean	endoplasmic reticulum	65.44	67.3
PGSC0003DMT400009952	Potato	cytosol	66.82	67.13
KRG96048	Soybean	cytosol	64.98	66.82
CDY41571	Canola	cytosol	60.83	64.71
CDY54608	Canola	cytosol	60.83	64.71
PGSC0003DMT400049302	Potato	cytosol	64.06	64.65
Solyc10g086310.1.1	Tomato	cytosol	62.21	64.59
Bra029804.1-P	Field mustard	cytosol	59.91	63.73
AT3G09910.1	Thale cress	cytosol	59.91	63.41
EES13169	Sorghum	cytosol	60.37	60.93

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	EntrezGene:8070529	UniProt:C5WZH6	EnsemblPlants:EER91530	ProteinID:EER91530
ProteinID:EER91530.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF879	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
EnsemblPlantsGene:SORBI_3001G230900	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A82609
RefSeq:XP_002464532.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:22283170..22287690

Molecular Weight (calculated)

23473.9 Da

IEP (calculated)

5.435

GRAVY (calculated)

-0.229

Length

217 amino acids

Sequence
(BLAST)

001: MGSPGAGSSG GGGHECSFKI LLIGDSGVGK SSLLVSFVAA SNLDADIAPT IGVDFKIKFL TVGGKKLKLT IWDTAGQERF RTITSSYYRG AQGIILVYDV
101: TKRESFSNLS DVWTKEIEAN STNKDCIKML VGNKVDKDDE RMVTKEEGLA FAEESGCLFL ESSAKTRENV EQCFEELALK ILEVPSLLEE GSSSVVKRNI
201: LKQKQESHAK NSSGCCQ

Best Arabidopsis Sequence Match ( AT5G03530.1 )
(BLAST)

001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS

Arabidopsis Description

RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.