Factsheet for PGSC0003DMT400009952

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008460.2.1	Tomato	plastid	98.61	98.61
VIT_08s0007g04740.t01	Wine grape	cytosol	84.26	86.26
PGSC0003DMT400049302	Potato	cytosol	84.72	85.12
CDY10375	Canola	cytosol	81.02	83.33
AT5G03530.1	Thale cress	cytosol	80.56	82.86
CDX70301	Canola	cytosol	79.63	81.9
Bra028830.1-P	Field mustard	cytosol	80.09	81.6
CDY44372	Canola	cytosol	80.09	81.6
Bra009524.1-P	Field mustard	cytosol	79.17	81.43
CDY04887	Canola	cytosol	79.63	81.13
KRH19962	Soybean	cytosol	79.17	81.04
KRH32565	Soybean	extracellular	79.17	80.66
KRH67770	Soybean	endoplasmic reticulum	78.7	80.57
KRG96048	Soybean	cytosol	78.24	80.09
CDY11028	Canola	cytosol	32.41	79.55
CDY54608	Canola	cytosol	73.15	77.45
CDY41571	Canola	cytosol	72.69	76.96
Bra029804.1-P	Field mustard	cytosol	71.76	75.98
AT3G09910.1	Thale cress	cytosol	71.76	75.61
GSMUA_Achr11P...	Banana	cytosol	68.52	70.14
Os03t0146000-01	Rice	plasma membrane	68.06	70.0
GSMUA_AchrUn_...	Banana	cytosol	68.52	69.16
EER95509	Sorghum	cytosol	66.2	68.1
PGSC0003DMT400063864	Potato	cytosol	65.74	67.94
TraesCS4B01G310800.1	Wheat	cytosol, extracellular	64.35	67.15
TraesCS1D01G142000.1	Wheat	cytosol, extracellular	66.2	66.82
EER91530	Sorghum	cytosol	67.13	66.82
TraesCS4A01G410700.1	Wheat	cytosol, extracellular	63.89	66.67
TraesCS4D01G308700.1	Wheat	cytosol, extracellular	63.89	66.67
TraesCS1A01G143100.1	Wheat	cytosol	66.67	66.36
TraesCS1B01G158500.1	Wheat	cytosol	66.67	66.36
HORVU1Hr1G038070.1	Barley	cytosol	66.67	66.36
Os10t0456600-01	Rice	cytosol	67.13	65.32
PGSC0003DMT400079770	Potato	cytosol	64.35	64.35
Zm00001d032811_P002	Maize	cytosol	66.67	58.3
Zm00001d014097_P002	Maize	cytosol	66.2	57.89
HORVU4Hr1G079250.1	Barley	cytosol, plastid	63.43	55.02
Zm00001d048393_P001	Maize	plastid	64.81	45.31

Protein Annotations

EntrezGene:102583984	MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M0ZX70	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400003898	PGSC:PGSC0003DMG400003898	EnsemblPlants:PGSC0003DMT400009952	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF579	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296BBCA
RefSeq:XP_006354390.1	SEG:seg	:	:	:	:

Description

RAB1X [Source:PGSC_GENE;Acc:PGSC0003DMG400003898]

Coordinates

chr9:+:4812445..4818046

Molecular Weight (calculated)

23655.2 Da

IEP (calculated)

5.454

GRAVY (calculated)

-0.260

Length

216 amino acids

Sequence
(BLAST)

001: MGPSTATTGQ SNSSYDLSFK ILLIGDSGVG KSSLLVSFIS NAVDDLAPTI GVDFKIKTLT VSGKKMKLTI WDTAGQERFR TLTSSYYRGA QGIILVYDVT
101: RRETFTNLSD VWAKEVELYS NNQDCVKMLV GNKVDRESER AVTREEGIAL AKELGGLFLE CSAKTRENVQ SCFEELALKI MEVPSLLEEG STVGKRNILK
201: QKQEQQTQQG GGACCS

Best Arabidopsis Sequence Match ( AT5G03530.1 )
(BLAST)

001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL VSFISSSVED LAPTIGVDFK IKQLTVGGKR LKLTIWDTAG QERFRTLTSS YYRGAQGIIL VYDVTRRETF
101: TNLVDVWGKE IELYSTNQEC VRMLVGNKVD RESERGVSRE EGIALAKELN CMFLECSART RQNVEQCFEE LALKIMEVPS LLEEGSSAVK RNILKQKPEH
201: QTNTQSGCCS

Arabidopsis Description

RABC2ARABC2A [Source:UniProtKB/TrEMBL;Acc:A0A178UJG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.