Factsheet for Zm00001d048393_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95509	Sorghum	cytosol	65.7	96.67
Os03t0146000-01	Rice	plasma membrane	61.16	90.0
TraesCS4B01G310800.1	Wheat	cytosol, extracellular	59.22	88.41
TraesCS4A01G410700.1	Wheat	cytosol, extracellular	59.22	88.41
TraesCS4D01G308700.1	Wheat	cytosol, extracellular	58.9	87.92
HORVU4Hr1G079250.1	Barley	cytosol, plastid	62.14	77.11
GSMUA_Achr11P...	Banana	cytosol	49.84	72.99
GSMUA_AchrUn_...	Banana	cytosol	49.84	71.96
Zm00001d032811_P002	Maize	cytosol	56.31	70.45
Zm00001d014097_P002	Maize	cytosol	56.31	70.45
VIT_08s0007g04740.t01	Wine grape	cytosol	47.25	69.19
KRH19962	Soybean	cytosol	46.6	68.25
KRH32565	Soybean	extracellular	46.6	67.92
AT5G03530.1	Thale cress	cytosol	45.63	67.14
CDY10375	Canola	cytosol	44.98	66.19
CDX70301	Canola	cytosol	44.98	66.19
Bra009524.1-P	Field mustard	cytosol	44.66	65.71
Solyc09g008460.2.1	Tomato	plastid	45.63	65.28
PGSC0003DMT400009952	Potato	cytosol	45.31	64.81
KRH67770	Soybean	endoplasmic reticulum	44.01	64.45
CDY44372	Canola	cytosol	44.01	64.15
CDY04887	Canola	cytosol	44.01	64.15
Bra028830.1-P	Field mustard	cytosol	44.01	64.15
KRG96048	Soybean	cytosol	43.69	63.98
CDY11028	Canola	cytosol	18.12	63.64
CDY54608	Canola	cytosol	41.42	62.75
CDY41571	Canola	cytosol	41.42	62.75
AT3G09910.1	Thale cress	cytosol	41.42	62.44
Bra029804.1-P	Field mustard	cytosol	40.45	61.27
Solyc10g086310.1.1	Tomato	cytosol	41.42	61.24
PGSC0003DMT400049302	Potato	cytosol	42.39	60.93

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	ProteinID:AQL09562.1	EMBL:BT063103	UniProt:C0P484	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF879
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001948C4E	EnsemblPlantsGene:Zm00001d048393	EnsemblPlants:Zm00001d048393_P001
EnsemblPlants:Zm00001d048393_T001	:	:	:	:	:

Description

Ras-related protein RABC2a

Coordinates

chr9:+:155557499..155563185

Molecular Weight (calculated)

33581.3 Da

IEP (calculated)

9.653

GRAVY (calculated)

-0.244

Length

309 amino acids

Sequence
(BLAST)

001: MKKQNHARHV AVAGGPSPQP GTPPARASRP STASERRSPP DAARLLVTPF RFAFLPLSPF IPIGARPPSR TNPLAPAFPG ASLRFARDSI QASLVGGMAS
101: SPASSYDCSF KVLLIGDSAV GKSSLLVSFV SAAHIDDDIA PTIGVDFKIN FLSVGGKKLK LTIWDTAGQE RFRTITSSYY RGAHGIILVY DVTKRESFTN
201: LADVWTKEIE LHSTNKECIK MLVGNKVDKD EDRMVTKEEG LAFAQERGCL FVESSAKTRE NVEKCFEELA LKILQVPSLL EEGSSVVKRN TLTLKQKQEN
301: ANRSGGCCQ

Best Arabidopsis Sequence Match ( AT1G43890.1 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.