Factsheet for Bra029804.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54608	Canola	cytosol	94.12	94.12
AT3G09910.1	Thale cress	cytosol	90.69	90.24
Bra009524.1-P	Field mustard	cytosol	79.41	77.14
Bra028830.1-P	Field mustard	cytosol	79.41	76.42
VIT_08s0007g04740.t01	Wine grape	cytosol	78.43	75.83
Solyc10g086310.1.1	Tomato	cytosol	75.98	74.16
PGSC0003DMT400049302	Potato	cytosol	77.45	73.49
KRH67770	Soybean	endoplasmic reticulum	74.51	72.04
Solyc09g008460.2.1	Tomato	plastid	75.98	71.76
PGSC0003DMT400009952	Potato	cytosol	75.98	71.76
KRG96048	Soybean	cytosol	74.02	71.56
KRH19962	Soybean	cytosol	73.53	71.09
KRH32565	Soybean	extracellular	73.53	70.75
Bra034924.1-P	Field mustard	cytosol	67.16	64.62
Bra036934.1-P	Field mustard	cytosol	67.16	64.62
Bra032196.1-P	Field mustard	cytosol	67.16	64.32
GSMUA_Achr11P...	Banana	cytosol	64.22	62.09
Os03t0146000-01	Rice	plasma membrane	63.73	61.9
GSMUA_AchrUn_...	Banana	cytosol	64.22	61.22
EER91530	Sorghum	cytosol	63.73	59.91
TraesCS1D01G142000.1	Wheat	cytosol, extracellular	62.75	59.81
EER95509	Sorghum	cytosol	61.27	59.52
TraesCS4B01G310800.1	Wheat	cytosol, extracellular	60.29	59.42
TraesCS4A01G410700.1	Wheat	cytosol, extracellular	59.8	58.94
HORVU1Hr1G038070.1	Barley	cytosol	62.25	58.53
TraesCS4D01G308700.1	Wheat	cytosol, extracellular	59.31	58.45
TraesCS1A01G143100.1	Wheat	cytosol	61.76	58.06
TraesCS1B01G158500.1	Wheat	cytosol	61.76	58.06
Os10t0456600-01	Rice	cytosol	61.76	56.76
Zm00001d032811_P002	Maize	cytosol	63.73	52.63
Zm00001d014097_P002	Maize	cytosol	63.24	52.23
HORVU4Hr1G079250.1	Barley	cytosol, plastid	59.31	48.59
Zm00001d048393_P001	Maize	plastid	61.27	40.45

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra029804	EnsemblPlants:Bra029804.1	EnsemblPlants:Bra029804.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4ELY4	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	ScanProsite:PS00675	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF579	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Sigma_54_int_dom_ATP-bd_1	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0002547A49	SEG:seg	:	:	:	:

Description

AT3G09910 (E=6e-097) ATRAB18C, ATRABC2B | ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding

Coordinates

chrA05:+:22217341..22218711

Molecular Weight (calculated)

22896.6 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.277

Length

204 amino acids

Sequence
(BLAST)

001: MGSSSGTSGY DLSFKILLIG DSGVGKSSLL LSFISSSVQD LAPTIGVDFK IKQLKVRGKR VKLTIWDTAG QEKFRTLTSS YFRGSQGIIL VYDVTKRETF
101: LNLADVWAKE IELYSTNHDC IKMLVGNKVD IESERRVSRE EGTALAKELK FLFHECSART RENVKQCFEE LALKIMEVPS LLQEGSNSLK RKPDCRTHQS
201: RCCS

Best Arabidopsis Sequence Match ( AT3G09910.3 )
(BLAST)

001: MGSSSGQSGY DLSFKILLIG DSGVGKSSLL LSFISSSVED LAPTIGVDFK IKQMKVRGKR LKLTIWDTAG QEKFRTLTSS YFRGSQGIIL VYDVTKRETF
101: LNLADIWAKE IELYSTNHDC IKMLVGNKVD RESERKVSRE EGMALAKDLN CLFHECSART RENVNGCFEE LALKIMEVPS LLEEGSSSVK RKPDYRAHQG
201: RCCSS

Arabidopsis Description

RABC2BRABC2b [Source:UniProtKB/TrEMBL;Acc:A0A178V665]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.