Factsheet for TraesCS4D01G308700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G310800.1	Wheat	cytosol, extracellular	98.07	98.07
TraesCS4A01G410700.1	Wheat	cytosol, extracellular	98.07	98.07
EER95509	Sorghum	cytosol	89.37	88.1
Os03t0146000-01	Rice	plasma membrane	87.44	86.19
HORVU4Hr1G079250.1	Barley	cytosol, plastid	98.55	81.93
TraesCS1D01G142000.1	Wheat	cytosol, extracellular	82.13	79.44
GSMUA_Achr11P...	Banana	cytosol	74.88	73.46
GSMUA_AchrUn_...	Banana	cytosol	74.88	72.43
VIT_08s0007g04740.t01	Wine grape	cytosol	69.08	67.77
KRH19962	Soybean	cytosol	68.12	66.82
KRH32565	Soybean	extracellular	68.12	66.51
AT5G03530.1	Thale cress	cytosol	66.67	65.71
CDX70301	Canola	cytosol	66.67	65.71
Bra009524.1-P	Field mustard	cytosol	66.18	65.24
CDY10375	Canola	cytosol	66.18	65.24
CDY04887	Canola	cytosol	66.67	65.09
CDY44372	Canola	cytosol	66.18	64.62
Bra028830.1-P	Field mustard	cytosol	66.18	64.62
KRG96048	Soybean	cytosol	65.7	64.45
KRH67770	Soybean	endoplasmic reticulum	65.7	64.45
Solyc09g008460.2.1	Tomato	plastid	67.15	64.35
PGSC0003DMT400009952	Potato	cytosol	66.67	63.89
Solyc10g086310.1.1	Tomato	cytosol	62.8	62.2
PGSC0003DMT400049302	Potato	cytosol	63.77	61.4
CDY11028	Canola	cytosol	26.09	61.36
CDY54608	Canola	cytosol	60.39	61.27
AT3G09910.1	Thale cress	cytosol	60.39	60.98
CDY41571	Canola	cytosol	59.9	60.78
Bra029804.1-P	Field mustard	cytosol	58.45	59.31
Zm00001d048393_P001	Maize	plastid	87.92	58.9
TraesCS2D01G567100.1	Wheat	cytosol	57.97	55.3

Protein Annotations

MapMan:22.8.1.3	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF879	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS4D01G308700
EnsemblPlants:TraesCS4D01G308700.1	TIGR:cd01863	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:476865606..476870047

Molecular Weight (calculated)

22820.3 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.225

Length

207 amino acids

Sequence
(BLAST)

001: MGTTPGSSYD CSFKVLLIGD SAVGKSSLLV SFVSAAPTDD DISPTIGVDF KIKFLTVGDK KLKLTIWDTA GQERFRTITS SYYRGAHGII LVYDVTKRQS
101: FTNLADVWAK EIELHSTNKE CVKMLVGNKV DKDEDRMVTT EEGLAFAQQC GCLFLESSAK TRENVEKCFE ELVLKILEVP SLSEEGSSVV KRNSLKQKHE
201: KSGGCCQ

Best Arabidopsis Sequence Match ( AT1G43890.3 )
(BLAST)

001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS

Arabidopsis Description

RABC1Ras-related protein RABC1 [Source:UniProtKB/Swiss-Prot;Acc:O23657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.